Subconjunto

Genome-Wide Association Study on the Seedless Phenotype in Banana

The GWAS panel is a list of diploid accessions (composed of Musa acuminata and AA) carefully selected to support Genome-Wide Association Study (GWAS) in banana in order to quickly and accurately link areas of the genome with important traits.

Accessions were fingerprinted using the Genotyping By Sequencing (GBS) method (Elshire RJ et al, 2011) using PSTI restriction enzyme (http://www.ncbi.nlm.nih.gov/bioproject/PRJNA305234). A set of 129,658 unfiltered SNP markers were obtained that were subsequently filtered with a bioinformatic workflow at South Green Galaxy to get 5,544 robust SNP markers.

The filtered markers were deposited in dbSNP (ss#1971458520-1971464266). These SNPs mapped on DH Pahang v1 can be visualized on the JBrowse of the Banana Genome Hub (select GBS SNP panel)

Metadados do subconjunto


Criadores do subconjunto


Tratador de dados
Julie Sardos Bioversity International
Tratador de dados
Mathieu Rouard Bioversity International
Tratador de dados
Yann Hueber Bioversity International
Tratador de dados
Alberto Cenci Bioversity International
Tratador de dados
Katie E. Hyma Cornell University
Tratador de dados
Ines van den Houwe Bioversity International
Tratador de dados
Eva Hribova Institute of Experimental Botany
Tratador de dados
Brigitte Courtois CIRAD
Tratador de dados
Nicolas Roux Bioversity International

Dados e recursos


Dados de passaporte MCPD

MCPD - 78dab905-6f22-4185-9190-5a9f45b59677.xlsx

Apply custom filters to accessions in this subset

Explore subset accessions on the map

Entradas

Lista de entradas incluídas no subconjunto

1. ITC0063Musa aa • Pisang Tongat • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9J8J6
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9J8K7
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9J8TE
4. ITC0090Musa aa • Tjau Lagada • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JA6N
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JMBD
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JMGJ
7. ITC0258Musa aa • Pisang Madu • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JMNQ
8. ITC0266Musa aa • Sowmuk • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JNEB
9. ITC0267Musa aa • NBA 14 • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JNGD
10. ITC0281Musa aa • Akondro Mainty • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JP7U
11. ITC0292Musa aa • Djum Tau • Variedade tradicional/crioula • Indonésia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JPPE
12. ITC0294Musa aa • Pitu • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JPRG
13. ITC0299Musa aa • Guyod • Variedade tradicional/crioula • Filipinas+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JPYP
14. ITC0310Musa aa subgr. pisang jari buaya • Morong Princesa • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JQK6
15. ITC0312Musa aa subgr. pisang jari buaya • Pisang Jari Buaya • Variedade tradicional/crioula • Malásia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JQQA
16. ITC0316Musa aa subgr. pisang jari buaya • Saing Todloh • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JR2N
17. ITC0318Musa aa subgr. pisang jari buaya • Not Named • Variedade tradicional/crioula • Indonésia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JR6S
18. ITC0373Musa aa • Uwati • Variedade tradicional/crioula • Papua-Nova Guiné+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JVAE
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JVGM
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JVX~
21. ITC0395Musa aa • Lidi • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JW21
22. ITC0406Musa acuminata Colla • Pa (Musore) no.3 • Silvestre • Tailândia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JWKJ
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JWSR
24. ITC0415Musa acuminata Colla • Pisang Cici Alas • Silvestre • Indonésia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JX5U
25. ITC0434Musa aa • Racadag • Variedade tradicional/crioula • Filipinas+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JXYR
26. ITC0437Musa aa • Pisang Kermian • Variedade tradicional/crioula • Malásia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JYF4
27. ITC0446Musa aa • Pu-te La-Bum • Variedade tradicional/crioula • Malásia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JYZM
28. ITC0447Musa aa • Pu-te Wey • Variedade tradicional/crioula • Malásia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JZ1P
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K0BV
30. ITC0480Musa aa subgr. sucrier • Pisang Buntal • Variedade tradicional/crioula • Malásia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K14F
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K3WX
32. ITC0533Musa aa • Kluai Lep Mu Nang • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K42=
33. ITC0568Musa aa • Malaysian Blood • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K6E0
34. ITC0600Musa aa • Waimara • Variedade tradicional/crioula • Papua-Nova Guiné+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8CS
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8GX
36. ITC0603Musa aa • Somani • Variedade tradicional/crioula • Papua-Nova Guiné+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8K*
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8V3
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8Z7
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K93B
40. ITC0611Musa aa • Pisang Berlin • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K96E
41. ITC0612Musa aa • Mambee Thu • Variedade tradicional/crioula+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K99H
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K9Y1
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KAMQ
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KCD6
45. ITC0668Musa acuminata Colla • Pa (Musore) no.2 • Silvestre • Tailândia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KCSJ
46. ITC0679Musa aa • Pisang Sapon • Variedade tradicional/crioula • Indonésia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9M9VQ
47. ITC0685Musa aa • Pisang Pipit • Variedade tradicional/crioula • Indonésia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KDN9
48. ITC0689Musa aa • Pisang Bangkahulu • Variedade tradicional/crioula • Indonésia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KDVF
49. ITC0712Musa aa • AAcv Rose • Variedade tradicional/crioula • Indonésia+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KER7
50. ITC0770Musa aa • Navaradam • Variedade tradicional/crioula • Papua-Nova Guiné+ Adicionar à minha lista
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KGZ4