Anaerobic germination in Oryza sativa

Anaerobic germination (AG) in rice is a crucial trait that allows the plant to germinate and establish under flooded or waterlogged conditions. This trait is especially important in direct-seeded rice systems, where early flooding can occur. AG is enabled by physiological and biochemical adaptations that allow rice seeds to germinate despite low or no oxygen. Research has identified multiple quantitative trait loci (QTLs), including qAG1 and qAG3, as key contributors to AG tolerance (Saimohan et al., 2021; Vergara et al., 2023). Rice Biodiversity Center for Africa (RBCA) team identified twenty-nine (29) accessions possessing these alleles by genotyping 593 accessions using the 1k RiCA mid-density panel.

Type of subset
Representative
Method of selection
Molecular
Crop
rice
Number of accessions
27
FAO WIEWS Institute
Creation date
July 22 2024
Source
Genotyped by Intertek Lab using DArTseq SNP markers
Published in Genesys
21 October 2024
Subset metadata

Subset creators


Data collector
Arnaud Gouda Africa Rice Center
Data manager
Clinton Ogwuike Africa Rice Center
Data curator
Marie-Noelle Ndjiondjop Africa Rice Center

Data and resources


MCPD passport data

MCPD - 4ecf1828-c4ad-48fa-9978-eb505600834e.xlsx

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Accessions

List of accessions included in the subset

2. WAB0004963Oryza sativa L. subsp. indica S.Kato • WITA 11 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/H9WB6
3. WAB0005437Oryza sativa L. subsp. indica S.Kato • PTB 12 • Traditional cultivar/Landrace • IND
CIV033 • DOI: 10.18730/HA3QM
4. WAB0005635Oryza sativa L. subsp. indica S.Kato • TOX 4331-WAT-77-3-1-2-1-1 • Breeding/Research Material • NGA
CIV033 • DOI: 10.18730/HA81A
5. WAB0007150Oryza sativa L. subsp. indica S.Kato • VANDANA • Traditional cultivar/Landrace • IND
CIV033 • DOI: 10.18730/HB7RT
6. WAB0008100Oryza sativa L. subsp. indica S.Kato • TOS 404 • Traditional cultivar/Landrace • AUS
CIV033 • DOI: 10.18730/HBT8T
7. WAB0009182Oryza sativa L. subsp. indica S.Kato • TOS 7079 • Traditional cultivar/Landrace • SLE
CIV033 • DOI: 10.18730/HCB4B
8. WAB0009242Oryza sativa L. subsp. indica S.Kato • TOS 7316 • Traditional cultivar/Landrace • SLE
CIV033 • DOI: 10.18730/HCCCE
9. WAB0009524Oryza sativa L. subsp. indica S.Kato • TOS 7748 • Traditional cultivar/Landrace • TZA
CIV033 • DOI: 10.18730/HCHY7
10. WAB0010107Oryza sativa L. subsp. indica S.Kato • TOS 8673 • Traditional cultivar/Landrace • GMB
CIV033 • DOI: 10.18730/HCVKM
11. WAB0010729Oryza sativa L. subsp. indica S.Kato • TOS 9820 • Traditional cultivar/Landrace • NGA
CIV033 • DOI: 10.18730/HD6BZ
12. WAB0013263Oryza sativa L. subsp. indica S.Kato • TOS 14268 • Traditional cultivar/Landrace • GIN
CIV033 • DOI: 10.18730/HDW4S
13. WAB0014062Oryza sativa L. subsp. indica S.Kato • TOS 15390 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HE7MQ
14. WAB0014091Oryza sativa L. subsp. indica S.Kato • TOS 15433 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HE864
15. WAB0014126Oryza sativa L. subsp. indica S.Kato • TOS 15500 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HE92*
16. WAB0016835Oryza sativa L. subsp. indica S.Kato • ROHYB 154-B-45-1-B • Breeding/Research Material • SLE
CIV033 • DOI: 10.18730/HFHDW
17. WAB0019782Oryza sativa L. subsp. indica S.Kato • TOS 11816 • Traditional cultivar/Landrace • SEN
CIV033 • DOI: 10.18730/HGJ0=
18. WAB0022349Oryza sativa L. subsp. indica S.Kato • WAT317-WAS-B-B-70-8-3-5-11 • Breeding/Research Material • NGA
CIV033 • DOI: 10.18730/HH94=
19. WAB0023624Oryza sativa L. subsp. indica S.Kato • NCRO 48 • Advanced/improved cultivar • NGA
CIV033 • DOI: 10.18730/HHEJR
20. WAB0025389Oryza sativa L. subsp. indica S.Kato • TOS 16235 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HJ93P
21. WAB0025584Oryza sativa L. subsp. indica S.Kato • TOS 8506 • Traditional cultivar/Landrace • TZA
CIV033 • DOI: 10.18730/HJD54
22. WAB0025715Oryza sativa L. subsp. indica S.Kato • TOS 8445 • Traditional cultivar/Landrace • TZA
CIV033 • DOI: 10.18730/HJG8X
23. WAB0025854Oryza sativa L. subsp. indica S.Kato • TOS 15539 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HJKHQ
24. WAB0033222Oryza sativa L. subsp. indica S.Kato • IR 13540-56-3-2-1 (A) • Breeding/Research Material • PHL
CIV033 • DOI: 10.18730/HNRE~
25. WAB0033410Oryza sativa L. subsp. indica S.Kato • CC 107 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HNXB5
26. WAB0033439Oryza sativa L. subsp. indica S.Kato • CC 155 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HNY4Y
27. WAB0033741Oryza sativa L. subsp. japonica S.Kato • Owarihatamochi • Traditional cultivar/Landrace • JPN
CIV033 • DOI: 10.18730/HP5E5