Anaerobic germination in Oryza sativa

Anaerobic germination (AG) in rice is a crucial trait that allows the plant to germinate and establish under flooded or waterlogged conditions. This trait is especially important in direct-seeded rice systems, where early flooding can occur. AG is enabled by physiological and biochemical adaptations that allow rice seeds to germinate despite low or no oxygen. Research has identified multiple quantitative trait loci (QTLs), including qAG1 and qAG3, as key contributors to AG tolerance (Saimohan et al., 2021; Vergara et al., 2023). Rice Biodiversity Center for Africa (RBCA) team identified twenty-nine (29) accessions possessing these alleles by genotyping 593 accessions using the 1k RiCA mid-density panel.

Type of subset
Representative
Method of selection
Molecular
Crop
rice
Number of accessions
27
FAO WIEWS Institute
Creation date
July 22, 2024
Source
Genotyped by Intertek Lab using DArTseq SNP markers
Published in Genesys
October 21, 2024
Subset metadata

Subset creators


Data collector
Arnaud Gouda Africa Rice Center
Data manager
Clinton Ogwuike Africa Rice Center
Data curator
Marie-Noelle Ndjiondjop Africa Rice Center

Data and resources


MCPD passport data

MCPD - 4ecf1828-c4ad-48fa-9978-eb505600834e.xlsx

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Accessions

List of accessions included in the subset

2. WAB0004963 • Oryza sativa L. subsp. indica S.Kato • WITA 11 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/H9WB6
3. WAB0005437 • Oryza sativa L. subsp. indica S.Kato • PTB 12 • Traditional cultivar/Landrace • India
CIV033 • DOI: 10.18730/HA3QM
4. WAB0005635 • Oryza sativa L. subsp. indica S.Kato • TOX 4331-WAT-77-3-1-2-1-1 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HA81A
5. WAB0007150 • Oryza sativa L. subsp. indica S.Kato • VANDANA • Traditional cultivar/Landrace • India
CIV033 • DOI: 10.18730/HB7RT
6. WAB0008100 • Oryza sativa L. subsp. indica S.Kato • TOS 404 • Traditional cultivar/Landrace • Australia
CIV033 • DOI: 10.18730/HBT8T
7. WAB0009182 • Oryza sativa L. subsp. indica S.Kato • TOS 7079 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HCB4B
8. WAB0009242 • Oryza sativa L. subsp. indica S.Kato • TOS 7316 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HCCCE
9. WAB0009524 • Oryza sativa L. subsp. indica S.Kato • TOS 7748 • Traditional cultivar/Landrace • Tanzania
CIV033 • DOI: 10.18730/HCHY7
10. WAB0010107 • Oryza sativa L. subsp. indica S.Kato • TOS 8673 • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HCVKM
11. WAB0010729 • Oryza sativa L. subsp. indica S.Kato • TOS 9820 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HD6BZ
12. WAB0013263 • Oryza sativa L. subsp. indica S.Kato • TOS 14268 • Traditional cultivar/Landrace • Guinea
CIV033 • DOI: 10.18730/HDW4S
13. WAB0014062 • Oryza sativa L. subsp. indica S.Kato • TOS 15390 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HE7MQ
14. WAB0014091 • Oryza sativa L. subsp. indica S.Kato • TOS 15433 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HE864
15. WAB0014126 • Oryza sativa L. subsp. indica S.Kato • TOS 15500 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HE92*
16. WAB0016835 • Oryza sativa L. subsp. indica S.Kato • ROHYB 154-B-45-1-B • Advanced/improved cultivar • Sierra Leone
CIV033 • DOI: 10.18730/HFHDW
17. WAB0019782 • Oryza sativa L. subsp. indica S.Kato • TOS 11816 • Traditional cultivar/Landrace • Senegal
CIV033 • DOI: 10.18730/HGJ0=
18. WAB0022349 • Oryza sativa L. subsp. indica S.Kato • WAT317-WAS-B-B-70-8-3-5-11 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HH94=
19. WAB0023624 • Oryza sativa L. subsp. indica S.Kato • NCRO 48 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HHEJR
20. WAB0025389 • Oryza sativa L. subsp. indica S.Kato • TOS 16235 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HJ93P
21. WAB0025584 • Oryza sativa L. subsp. indica S.Kato • TOS 8506 • Traditional cultivar/Landrace • Tanzania
CIV033 • DOI: 10.18730/HJD54
22. WAB0025715 • Oryza sativa L. subsp. indica S.Kato • TOS 8445 • Traditional cultivar/Landrace • Tanzania
CIV033 • DOI: 10.18730/HJG8X
23. WAB0025854 • Oryza sativa L. subsp. indica S.Kato • TOS 15539 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HJKHQ
24. WAB0033222 • Oryza sativa L. subsp. indica S.Kato • IR 13540-56-3-2-1 (A) • Advanced/improved cultivar • Philippines
CIV033 • DOI: 10.18730/HNRE~
25. WAB0033410 • Oryza sativa L. subsp. indica S.Kato • CC 107 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HNXB5
26. WAB0033439 • Oryza sativa L. subsp. indica S.Kato • CC 155 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HNY4Y
27. WAB0033741 • Oryza sativa L. subsp. japonica S.Kato • Owarihatamochi • Traditional cultivar/Landrace • Japan
CIV033 • DOI: 10.18730/HP5E5