Identification of Zinc-rich rice accessions using XRF analysis in O. glaberrima and O. sativa minicore collections

Micronutrient deficiency is increasingly recognized as a major challenge to food and nutrition security, particularly in developing countries. There is a growing consensus on the importance of food-based approaches to address this issue. The broad genetic diversity present in plant genetic resources offers valuable opportunities to identify micronutrient-rich genotypes for direct consumption or for use in crop improvement through breeding strategies. For instance, zinc concentration in unpolished brown rice has been reported to range from 14.5 to 35.3 mg/kg (Maganti et al., 2020). Using X-ray fluorescence (XRF), we analyzed the nutritional composition of 700 accessions derived from minicore collections of Oryza glaberrima and Oryza sativa. Our results identified 75 zinc-rich rice accessions (37 O. glaberrima and 38 O. sativa). Zinc concentration in unpolished grains ranged from 30 to 39.5 mg/kg, with six accessions (3 O. glaberrima and 3 O. sativa) showing particularly high levels between 35 and 39.5 mg/kg.

Type of subset
Selective
Method of selection
X-ray fluorescence (XRF)
Crop
rice
Number of accessions
75
FAO WIEWS Institute
Creation date
July 29, 2025
Published in Genesys
July 30, 2025
Subset metadata

Subset creators


Data manager
Clinton Obinna Ogwuike Africa Rice Center
Data collector
Arnaud Gouda Africa Rice Center
Data digitizer
Arnaud Gouda Africa Rice Center
Data curator
Marie-Noelle Ndjiondjop Africa Rice Center

Data and resources


MCPD passport data

MCPD - 75f8333b-648f-4dc9-adea-5c743768c72c.xlsx

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Accessions

List of accessions included in the subset

2. WAB0004692 • Oryza sativa L. subsp. indica S.Kato • CHOKOTO • Traditional cultivar/Landrace • Japan
CIV033 • DOI: 10.18730/H9NKC
3. WAB0007088 • Oryza sativa L. subsp. japonica S.Kato • WAB519-55-3 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HB5T1
4. WAB0007101 • Oryza sativa L. subsp. japonica S.Kato • IDSA 85 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HB67E
5. WAB0007125 • Oryza sativa L. subsp. indica S.Kato • INDIAN NDINGO • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HB6Z1
6. WAB0007127 • Oryza sativa L. subsp. indica S.Kato • KONSUNKUTO MANO • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HB713
7. WAB0008153 • Oryza sativa L. subsp. indica S.Kato • TOS 472 • Traditional cultivar/Landrace • Palau
CIV033 • DOI: 10.18730/HBVS1
8. WAB0008207 • Oryza sativa L. subsp. japonica S.Kato • TOS 662 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HBX47
9. WAB0008292 • Oryza sativa L. subsp. indica S.Kato • TOS 1143 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HBYKH
10. WAB0008294 • Oryza sativa L. subsp. indica S.Kato • TOS 1304 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HBYNK
11. WAB0008756 • Oryza sativa L. subsp. indica S.Kato • TOS 5798 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQCG$
12. WAB0008759 • Oryza sativa L. subsp. indica S.Kato • TOS 5804 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQEDN
13. WAB0008820 • Oryza sativa L. subsp. indica S.Kato • TOS 5893 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQK7V
14. WAB0009004 • Oryza sativa L. subsp. japonica S.Kato • TOS 6847 • Traditional cultivar/Landrace • Zimbabwe
CIV033 • DOI: 10.18730/HC7RE
15. WAB0009435 • Oryza sativa L. subsp. indica S.Kato • TOS 7610 • Traditional cultivar/Landrace • Cameroon
CIV033 • DOI: 10.18730/HCFTD
16. WAB0009524 • Oryza sativa L. subsp. indica S.Kato • TOS 7748 • Traditional cultivar/Landrace • Tanzania
CIV033 • DOI: 10.18730/HCHY7
17. WAB0009832 • Oryza sativa L. subsp. indica S.Kato • TOS 8190 • Traditional cultivar/Landrace • Ivory Coast
CIV033 • DOI: 10.18730/HCSJX
18. WAB0010648 • Oryza sativa L. subsp. indica S.Kato • TOS 9658 • Traditional cultivar/Landrace • Ivory Coast
CIV033 • DOI: 10.18730/HD45=
19. WAB0010715 • Oryza sativa L. subsp. indica S.Kato • TOS 9800 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HD5XH
20. WAB0012084 • Oryza sativa L. subsp. indica S.Kato • TOS 12643 • Traditional cultivar/Landrace • Malaysia
CIV033 • DOI: 10.18730/HDHHK
21. WAB0012102 • Oryza sativa L. subsp. indica S.Kato • TOS 12670 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HDHY*
22. WAB0012103 • Oryza sativa L. subsp. japonica S.Kato • TOS 12671 • Traditional cultivar/Landrace • India
CIV033 • DOI: 10.18730/HDHZ~
23. WAB0014150 • Oryza sativa L. subsp. indica S.Kato • TOS 15532 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HE9MD
24. WAB0015789 • Oryza sativa L. subsp. indica S.Kato • IR 29708-23-1-2-2 • Advanced/improved cultivar • Philippines
CIV033 • DOI: 10.18730/HES1S
25. WAB0018102 • Oryza sativa L. subsp. japonica S.Kato • NERICA 4 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPG4
26. WAB0019532 • Oryza sativa L. subsp. indica S.Kato • WAT83-TGR-3-4 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HGFCS
27. WAB0019623 • Oryza sativa L. subsp. japonica S.Kato • NERICA 15 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPN9
28. WAB0022359 • Oryza sativa L. subsp. indica S.Kato • TOS 8129 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HH9C6
29. WAB0024938 • Oryza sativa L. subsp. indica S.Kato • TOS 7380 • Traditional cultivar/Landrace • El Salvador
CIV033 • DOI: 10.18730/HHZ83
30. WAB0025017 • Oryza sativa L. subsp. japonica S.Kato • TOS 9134 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HJ0SF
31. WAB0025389 • Oryza sativa L. subsp. indica S.Kato • TOS 16235 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HJ93P
32. WAB0026547 • Oryza sativa L. subsp. indica S.Kato • FONAIAP 2000 • Advanced/improved cultivar • Venezuela
CIV033 • DOI: 10.18730/HJXWN
33. WAB0027170 • Oryza sativa L. subsp. japonica S.Kato • TOS 6933 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HQE19
34. WAB0027227 • Oryza sativa L. subsp. japonica S.Kato • TOS 9035 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HK9CK
35. WAB0027244 • Oryza sativa L. subsp. japonica S.Kato • TOX 1779-3-3-201-1B • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HK9V$
36. WAB0029264 • Oryza barthii A. Chev. • DIAKAO OUADEO A • Traditional cultivar/Landrace • Mali
CIV033 • DOI: 10.18730/HKFHZ
37. WAB0029278 • Oryza sativa L. subsp. indica S.Kato • DAMBOU • Traditional cultivar/Landrace • Mali
CIV033 • DOI: 10.18730/HKFY7
38. WAB0037303 • Oryza sativa L. subsp. indica S.Kato • BDI14-138 • Traditional cultivar/Landrace • Burundi
CIV033 • DOI: 10.18730/SCFJ4
39. WAB0040495 • Oryza glaberrima Steud. • TOG 5573 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGQV5
40. WAB0040501 • Oryza sativa L. subsp. japonica S.Kato • TOG 8046 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGR1B
41. WAB0040544 • Oryza glaberrima Steud. • TOG 7435 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGSCH
42. WAB0040551 • Oryza glaberrima Steud. • TOG 5837 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGSKR
43. WAB0040552 • Oryza glaberrima Steud. • TOG 9030 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGSMS
44. WAB0040558 • Oryza glaberrima Steud. • TOG 6216 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGSTZ
45. WAB0040583 • Oryza glaberrima Steud. • TOG 7977 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGTKK
46. WAB0040584 • Oryza glaberrima Steud. • TOG 7682 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGTMM
47. WAB0040585 • Oryza glaberrima Steud. • TOG 7642 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGTNN
48. WAB0040593 • Oryza glaberrima Steud. • TOS 6833 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGTXX
49. WAB0040602 • Oryza glaberrima Steud. • TOG 5700 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGV61
50. WAB0040614 • Oryza glaberrima Steud. • TOG 5638 • Breeding/Research Material • Benin
CIV033 • DOI: 10.18730/1KGVJD