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Genome-Wide Association Study on the Seedless Phenotype in Banana

The GWAS panel is a list of diploid accessions (composed of Musa acuminata and AA) carefully selected to support Genome-Wide Association Study (GWAS) in banana in order to quickly and accurately link areas of the genome with important traits.

Accessions were fingerprinted using the Genotyping By Sequencing (GBS) method (Elshire RJ et al, 2011) using PSTI restriction enzyme (http://www.ncbi.nlm.nih.gov/bioproject/PRJNA305234). A set of 129,658 unfiltered SNP markers were obtained that were subsequently filtered with a bioinformatic workflow at South Green Galaxy to get 5,544 robust SNP markers.

The filtered markers were deposited in dbSNP (ss#1971458520-1971464266). These SNPs mapped on DH Pahang v1 can be visualized on the JBrowse of the Banana Genome Hub (select GBS SNP panel)

Crop

banana

Number of accessions

104

FAO WIEWS Institute

Bioversity International Musa Germplasm Transit Centre

Creation date

2016

Source

https://www.crop-diversity.org/mgis/content/gwas-panel-gbs

Published in Genesys

September 12, 2019

Subset metadata

Subset creators

Data curator

Julie Sardos Bioversity International

Data curator

Mathieu Rouard Bioversity International

Data curator

Yann Hueber Bioversity International

Data curator

Alberto Cenci Bioversity International

Data curator

Katie E. Hyma Cornell University

Data curator

Ines van den Houwe Bioversity International

Data curator

Eva Hribova Institute of Experimental Botany

Data curator

Brigitte Courtois CIRAD

Data curator

Nicolas Roux Bioversity International

Data and resources

MCPD passport data

MCPD - 78dab905-6f22-4185-9190-5a9f45b59677.xlsx

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Accessions

List of accessions included in the subset

1. ITC0063 • Musa aa • Pisang Tongat • Traditional cultivar/Landrace

BEL084 • DOI: 10.18730/9J8J6

2. ITC0069 • Musa acuminata Colla • Type 2 • Wild

BEL084 • DOI: 10.18730/9J8K7

3. ITC0074 • Musa acuminata subsp. malaccensis (Ridl.) N. W. Simmonds • Malaccensis • Wild

BEL084 • DOI: 10.18730/9J8TE

4. ITC0090 • Musa aa • Tjau Lagada • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9JA6N

5. ITC0249 • Musa acuminata subsp. burmannicoides De Langhe • Calcutta 4 • Wild • Myanmar

BEL084 • DOI: 10.18730/9JMBD

6. ITC0253 • Musa acuminata subsp. microcarpa (Becc.) N. W. Simmonds • Borneo • Wild • Indonesia

BEL084 • DOI: 10.18730/9JMGJ

7. ITC0258 • Musa aa • Pisang Madu • Traditional cultivar/Landrace • Malaysia

BEL084 • DOI: 10.18730/9JMNQ

8. ITC0266 • Musa aa • Sowmuk • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9JNEB

9. ITC0267 • Musa aa • NBA 14 • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9JNGD

10. ITC0281 • Musa aa • Akondro Mainty • Traditional cultivar/Landrace

BEL084 • DOI: 10.18730/9JP7U

11. ITC0292 • Musa aa • Djum Tau • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9JPPE

12. ITC0294 • Musa aa • Pitu • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9JPRG

13. ITC0299 • Musa aa • Guyod • Traditional cultivar/Landrace • Philippines

BEL084 • DOI: 10.18730/9JPYP

14. ITC0310 • Musa aa subgr. pisang jari buaya • Morong Princesa • Traditional cultivar/Landrace • Philippines

BEL084 • DOI: 10.18730/9JQK6

15. ITC0312 • Musa aa subgr. pisang jari buaya • Pisang Jari Buaya • Traditional cultivar/Landrace • Malaysia

BEL084 • DOI: 10.18730/9JQQA

16. ITC0316 • Musa aa subgr. pisang jari buaya • Saing Todloh • Traditional cultivar/Landrace • Philippines

BEL084 • DOI: 10.18730/9JR2N

17. ITC0318 • Musa aa subgr. pisang jari buaya • Not Named • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9JR6S

18. ITC0373 • Musa aa • Uwati • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9JVAE

19. ITC0378 • Musa acuminata Colla • Higa • Wild • Indonesia

BEL084 • DOI: 10.18730/9JVGM

20. ITC0393 • Musa acuminata subsp. truncata (Ridl.) Kiew • Truncata • Wild

BEL084 • DOI: 10.18730/9JVX~

21. ITC0395 • Musa aa • Lidi • Traditional cultivar/Landrace

BEL084 • DOI: 10.18730/9JW21

22. ITC0406 • Musa acuminata Colla • Pa (Musore) no.3 • Wild • Thailand

BEL084 • DOI: 10.18730/9JWKJ

23. ITC0408 • Musa acuminata Colla • Pa (Songkhla) • Wild • Thailand

BEL084 • DOI: 10.18730/9JWSR

24. ITC0415 • Musa acuminata Colla • Pisang Cici Alas • Wild • Indonesia

BEL084 • DOI: 10.18730/9JX5U

25. ITC0434 • Musa aa • Racadag • Traditional cultivar/Landrace • Philippines

BEL084 • DOI: 10.18730/9JXYR

26. ITC0437 • Musa aa • Pisang Kermian • Traditional cultivar/Landrace • Malaysia

BEL084 • DOI: 10.18730/9JYF4

27. ITC0446 • Musa aa • Pu-te La-Bum • Traditional cultivar/Landrace • Malaysia

BEL084 • DOI: 10.18730/9JYZM

28. ITC0447 • Musa aa • Pu-te Wey • Traditional cultivar/Landrace • Malaysia

BEL084 • DOI: 10.18730/9JZ1P

29. ITC0465 • Musa acuminata subsp. banksii N. W. Simmonds • Waigu • Wild • Indonesia

BEL084 • DOI: 10.18730/9K0BV

30. ITC0480 • Musa aa subgr. sucrier • Pisang Buntal • Traditional cultivar/Landrace • Malaysia

BEL084 • DOI: 10.18730/9K14F

31. ITC0530 • Musa acuminata Colla • A3617/9 • Wild

BEL084 • DOI: 10.18730/9K3WX

32. ITC0533 • Musa aa • Kluai Lep Mu Nang • Traditional cultivar/Landrace

BEL084 • DOI: 10.18730/9K42=

33. ITC0568 • Musa aa • Malaysian Blood • Traditional cultivar/Landrace

BEL084 • DOI: 10.18730/9K6E0

34. ITC0600 • Musa aa • Waimara • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9K8CS

35. ITC0602 • Musa acuminata subsp. banksii N. W. Simmonds • Hawain 3 • Wild • Papua New Guinea

BEL084 • DOI: 10.18730/9K8GX

36. ITC0603 • Musa aa • Somani • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9K8K*

37. ITC0606 • Musa acuminata Colla • Hybrid • Wild • Indonesia

BEL084 • DOI: 10.18730/9K8V3

38. ITC0608 • Musa acuminata Colla • Hybrid • Wild • Australia

BEL084 • DOI: 10.18730/9K8Z7

39. ITC0609 • Musa acuminata subsp. malaccensis (Ridl.) N. W. Simmonds • Pahang • Wild • Malaysia

BEL084 • DOI: 10.18730/9K93B

40. ITC0611 • Musa aa • Pisang Berlin • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9K96E

41. ITC0612 • Musa aa • Mambee Thu • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9K99H

42. ITC0620 • Musa acuminata subsp. banksii N. W. Simmonds • Banksii • Wild • Papua New Guinea

BEL084 • DOI: 10.18730/9K9Y1

43. ITC0629 • Musa acuminata Colla • Selangor 2 • Wild

BEL084 • DOI: 10.18730/9KAMQ

44. ITC0660 • Musa acuminata subsp. siamea N. W. Simmonds • Khae (Phrae) • Wild • Thailand

BEL084 • DOI: 10.18730/9KCD6

45. ITC0668 • Musa acuminata Colla • Pa (Musore) no.2 • Wild • Thailand

BEL084 • DOI: 10.18730/9KCSJ

46. ITC0679 • Musa aa • Pisang Sapon • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9M9VQ

47. ITC0685 • Musa aa • Pisang Pipit • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9KDN9

48. ITC0689 • Musa aa • Pisang Bangkahulu • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9KDVF

49. ITC0712 • Musa aa • AAcv Rose • Traditional cultivar/Landrace • Indonesia

BEL084 • DOI: 10.18730/9KER7

50. ITC0770 • Musa aa • Navaradam • Traditional cultivar/Landrace • Papua New Guinea

BEL084 • DOI: 10.18730/9KGZ4