Subset

Genome-Wide Association Study on the Seedless Phenotype in Banana

The GWAS panel is a list of diploid accessions (composed of Musa acuminata and AA) carefully selected to support Genome-Wide Association Study (GWAS) in banana in order to quickly and accurately link areas of the genome with important traits.

Accessions were fingerprinted using the Genotyping By Sequencing (GBS) method (Elshire RJ et al, 2011) using PSTI restriction enzyme (http://www.ncbi.nlm.nih.gov/bioproject/PRJNA305234). A set of 129,658 unfiltered SNP markers were obtained that were subsequently filtered with a bioinformatic workflow at South Green Galaxy to get 5,544 robust SNP markers.

The filtered markers were deposited in dbSNP (ss#1971458520-1971464266). These SNPs mapped on DH Pahang v1 can be visualized on the JBrowse of the Banana Genome Hub (select GBS SNP panel)

Subset metadata


Subset creators


Data curator
Julie Sardos Bioversity International
Data curator
Mathieu Rouard Bioversity International
Data curator
Yann Hueber Bioversity International
Data curator
Alberto Cenci Bioversity International
Data curator
Katie E. Hyma Cornell University
Data curator
Ines van den Houwe Bioversity International
Data curator
Eva Hribova Institute of Experimental Botany
Data curator
Brigitte Courtois CIRAD
Data curator
Nicolas Roux Bioversity International

Data and resources


MCPD passport data

MCPD - 78dab905-6f22-4185-9190-5a9f45b59677.xlsx

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Accessions

List of accessions included in the subset

1. ITC0063Musa aa • Pisang Tongat • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9J8J6
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9J8K7
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9J8TE
4. ITC0090Musa aa • Tjau Lagada • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JA6N
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JMBD
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JMGJ
7. ITC0258Musa aa • Pisang Madu • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JMNQ
8. ITC0266Musa aa • Sowmuk • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JNEB
9. ITC0267Musa aa • NBA 14 • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JNGD
10. ITC0281Musa aa • Akondro Mainty • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JP7U
11. ITC0292Musa aa • Djum Tau • Traditional cultivar/Landrace • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JPPE
12. ITC0294Musa aa • Pitu • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JPRG
13. ITC0299Musa aa • Guyod • Traditional cultivar/Landrace • Philippines+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JPYP
14. ITC0310Musa aa subgr. pisang jari buaya • Morong Princesa • Traditional cultivar/Landrace • Philippines+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JQK6
15. ITC0312Musa aa subgr. pisang jari buaya • Pisang Jari Buaya • Traditional cultivar/Landrace • Malaysia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JQQA
16. ITC0316Musa aa subgr. pisang jari buaya • Saing Todloh • Traditional cultivar/Landrace • Philippines+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JR2N
17. ITC0318Musa aa subgr. pisang jari buaya • Not Named • Traditional cultivar/Landrace • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JR6S
18. ITC0373Musa aa • Uwati • Traditional cultivar/Landrace • Papua New Guinea+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JVAE
19. ITC0378Musa acuminata Colla • Higa • Wild • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JVGM
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JVX~
21. ITC0395Musa aa • Lidi • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JW21
22. ITC0406Musa acuminata Colla • Pa (Musore) no.3 • Wild • Thailand+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JWKJ
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JWSR
24. ITC0415Musa acuminata Colla • Pisang Cici Alas • Wild • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JX5U
25. ITC0434Musa aa • Racadag • Traditional cultivar/Landrace • Philippines+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JXYR
26. ITC0437Musa aa • Pisang Kermian • Traditional cultivar/Landrace • Malaysia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JYF4
27. ITC0446Musa aa • Pu-te La-Bum • Traditional cultivar/Landrace • Malaysia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JYZM
28. ITC0447Musa aa • Pu-te Wey • Traditional cultivar/Landrace • Malaysia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9JZ1P
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K0BV
30. ITC0480Musa aa subgr. sucrier • Pisang Buntal • Traditional cultivar/Landrace • Malaysia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K14F
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K3WX
32. ITC0533Musa aa • Kluai Lep Mu Nang • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K42=
33. ITC0568Musa aa • Malaysian Blood • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K6E0
34. ITC0600Musa aa • Waimara • Traditional cultivar/Landrace • Papua New Guinea+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8CS
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8GX
36. ITC0603Musa aa • Somani • Traditional cultivar/Landrace • Papua New Guinea+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8K*
37. ITC0606Musa acuminata Colla • Hybrid • Wild • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8V3
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K8Z7
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K93B
40. ITC0611Musa aa • Pisang Berlin • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K96E
41. ITC0612Musa aa • Mambee Thu • Traditional cultivar/Landrace+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K99H
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9K9Y1
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KAMQ
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KCD6
45. ITC0668Musa acuminata Colla • Pa (Musore) no.2 • Wild • Thailand+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KCSJ
46. ITC0679Musa aa • Pisang Sapon • Traditional cultivar/Landrace • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9M9VQ
47. ITC0685Musa aa • Pisang Pipit • Traditional cultivar/Landrace • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KDN9
48. ITC0689Musa aa • Pisang Bangkahulu • Traditional cultivar/Landrace • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KDVF
49. ITC0712Musa aa • AAcv Rose • Traditional cultivar/Landrace • Indonesia+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KER7
50. ITC0770Musa aa • Navaradam • Traditional cultivar/Landrace • Papua New Guinea+ Add to my list
BEL084Bioversity International Musa Germplasm Transit Centre, Belgium • DOI: 10.18730/9KGZ4