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Revised Bacterial blight (BLB) resistant Oryza glaberrima and Oryza sativa germplasms.

Bacterial blight is one of the most devastating diseases in many rice-growing regions and can result in yield losses of up to 50% in West Africa. It is caused by various pathogens of Xanthomonas oryzae pv. oryzae (Xoo). Resistance to bacterial blight is determined by both race-specific genes and quantitative trait loci, with over 45 race-specific resistance genes (designated with the prefixes Xa or xa for Xanthomonas) reported by Neelam et al., (2020). The Rice Biodiversity Center for Africa (RBCA) team identified 50 accessions that carry one or two BLB resistance QTLs using several DArTseq SNPs including xa13_1, xa13_2, chr11_21190115, xa4_2, Xa7_1, and Xa7_2, located on rice chromosomes 8, 11, and 6, respectively. This mini collection consists of 40 Oryza sativa and 10 Oryza glaberrima accessions, distinct from the previous BLB resistant minicore set published

Crop

Rice

Number of accessions

FAO WIEWS Institute

Africa Rice Center

Creation date

13 November 2023

Published in Genesys

8 January 2024

Subset metadata

Subset creators

Data collector

Marie Noelle Ndjiondjop AfricaRice

Data and resources

MCPD passport data

MCPD - 83b8c8b8-6ef6-4ca6-97c6-27db61fcde8c.xlsx

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Accessions

List of accessions included in the subset

1. WAB0000054 • Oryza sativa L. subsp. japonica S.Kato • WAB181-18 • Advanced/improved cultivar • CIV

CIV033 • DOI: 10.18730/H86W$

2. WAB0000058 • Oryza sativa L. subsp. japonica S.Kato • WAB96-1-1 • Advanced/improved cultivar • CIV

CIV033 • DOI: 10.18730/H8701

3. WAB0004142 • Oryza sativa L. subsp. indica S.Kato • RD 15 • Traditional cultivar/Landrace • THA

CIV033 • DOI: 10.18730/H979=

4. WAB0004201 • Oryza sativa L. subsp. indica S.Kato • TOX 3095-71-1-3-2 • Breeding/Research Material • NGA

CIV033 • DOI: 10.18730/H98H1

5. WAB0004298 • Oryza sativa L. subsp. indica S.Kato • AMINA NJAI MANO • Traditional cultivar/Landrace • GMB

CIV033 • DOI: 10.18730/H9AJX

6. WAB0004871 • Oryza sativa L. subsp. indica S.Kato • TOX 3519-45-1-2-1 • Breeding/Research Material • NGA

CIV033 • DOI: 10.18730/H9TDJ

7. WAB0006241 • Oryza sativa L. subsp. indica S.Kato • SIK P5-0-4-3-5-2-4 • Breeding/Research Material • MLI

CIV033 • DOI: 10.18730/HAQ19

8. WAB0006290 • Oryza sativa L. subsp. indica S.Kato • SIK 7-4-1-2-1 • Breeding/Research Material • MLI

CIV033 • DOI: 10.18730/HAR8B

9. WAB0006849 • Oryza sativa L. subsp. indica S.Kato • BASMATI 370 • Advanced/improved cultivar • IND

CIV033 • DOI: 10.18730/HAYW1

10. WAB0007800 • Oryza sativa L. subsp. indica S.Kato • FAROX 304-1-1 • Advanced/improved cultivar • NGA

CIV033 • DOI: 10.18730/HBKV6

11. WAB0007879 • Oryza glaberrima Steud. • TOG 5672 • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/HQMGZ

12. WAB0008527 • Oryza sativa L. subsp. indica S.Kato • TOS 5257 • Traditional cultivar/Landrace • SLE

CIV033 • DOI: 10.18730/HC4TZ

13. WAB0008562 • Oryza sativa L. subsp. indica S.Kato • TOS 5310 • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/HQ6R=

14. WAB0008681 • Oryza glaberrima Steud. • TOG 5692 • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/HQMW6

15. WAB0008954 • Oryza sativa L. subsp. indica S.Kato • TOS 6454 • Traditional cultivar/Landrace • LBR

CIV033 • DOI: 10.18730/HC6ZT

16. WAB0013263 • Oryza sativa L. subsp. indica S.Kato • TOS 14268 • Traditional cultivar/Landrace • GIN

CIV033 • DOI: 10.18730/HDW4S

17. WAB0013345 • Oryza glaberrima Steud. • YG 459 • Traditional cultivar/Landrace • GIN

CIV033 • DOI: 10.18730/SCY4T

18. WAB0014126 • Oryza sativa L. subsp. indica S.Kato • TOS 15500 • Traditional cultivar/Landrace • BFA

CIV033 • DOI: 10.18730/HE92*

19. WAB0015430 • Oryza sativa L. subsp. indica S.Kato • CT 6196-33-11-2-2-3P • Breeding/Research Material • COL

CIV033 • DOI: 10.18730/HEHZN

20. WAB0015542 • Oryza sativa L. subsp. indica S.Kato • DJU KEME • Traditional cultivar/Landrace • GIN

CIV033 • DOI: 10.18730/HEMP$

21. WAB0015563 • Oryza sativa L. subsp. indica S.Kato • FAC 906 • Traditional cultivar/Landrace • BDI

CIV033 • DOI: 10.18730/HEN07

22. WAB0015567 • Oryza sativa L. subsp. japonica S.Kato • FARO 33 (FAROX 233-1-1-1) • Advanced/improved cultivar • NGA

CIV033 • DOI: 10.18730/HEN29

23. WAB0016118 • Oryza sativa L. subsp. indica S.Kato • IR 57287-99-1-3 • Breeding/Research Material • PHL

CIV033 • DOI: 10.18730/HF10N

24. WAB0016397 • Oryza sativa L. subsp. indica S.Kato • ITA 212 • Advanced/improved cultivar • NGA

CIV033 • DOI: 10.18730/HF7J9

25. WAB0016600 • Oryza sativa L. subsp. indica S.Kato • ROHYB 148-B-B-1-B • Breeding/Research Material • SLE

CIV033 • DOI: 10.18730/HFACS

26. WAB0016938 • Oryza sativa L. subsp. indica S.Kato • ROHYB 163-B-1-1-1-B • Breeding/Research Material • SLE

CIV033 • DOI: 10.18730/HFMFF

27. WAB0016939 • Oryza sativa L. subsp. indica S.Kato • ROHYB 163-B-1-3-B • Breeding/Research Material • SLE

CIV033 • DOI: 10.18730/HFMGG

28. WAB0017141 • Oryza sativa L. subsp. indica S.Kato • ROHYB 209-B-2-B • Breeding/Research Material • SLE

CIV033 • DOI: 10.18730/HFTGQ

29. WAB0019347 • Oryza sativa L. subsp. indica S.Kato • WAT371-TGR-2-3 • Breeding/Research Material • NGA

CIV033 • DOI: 10.18730/HGAPQ

30. WAB0019750 • Oryza sativa L. subsp. indica S.Kato • NERICA-L-54 • Advanced/improved cultivar • SEN

CIV033 • DOI: 10.18730/SCN3~

31. WAB0020078 • Oryza glaberrima Steud. • TOG 5681 • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/HGS22

32. WAB0020113 • Oryza glaberrima Steud. • TOG 5418 • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/HQ8BC

33. WAB0020143 • Oryza glaberrima Steud. • TOG 5691 • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/HQNBN

34. WAB0020603 • Oryza glaberrima Steud. • TOG 8535 • Traditional cultivar/Landrace • GMB

CIV033 • DOI: 10.18730/HGVE4

35. WAB0020854 • Oryza glaberrima Steud. • TOG 12136 • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/SC9S4

36. WAB0021280 • Oryza sativa L. subsp. indica S.Kato • Jalmagna • Traditional cultivar/Landrace • IND

CIV033 • DOI: 10.18730/HH2MC

37. WAB0021404 • Oryza glaberrima Steud. • TOG 15105 • Traditional cultivar/Landrace • GIN

CIV033 • DOI: 10.18730/SEHF4

38. WAB0021566 • Oryza glaberrima Steud. • TOG 10985 • Traditional cultivar/Landrace • LBR

CIV033 • DOI: 10.18730/HH4WA

39. WAB0022314 • Oryza sativa L. subsp. indica S.Kato • RLOTHER N'137 AGANNI • Traditional cultivar/Landrace • IND

CIV033 • DOI: 10.18730/HH876

40. WAB0023588 • Oryza sativa L. subsp. indica S.Kato • CT15021-87-2-1-1 • Breeding/Research Material • COL

CIV033 • DOI: 10.18730/HHE9F

41. WAB0023624 • Oryza sativa L. subsp. indica S.Kato • NCRO 48 • Advanced/improved cultivar • NGA

CIV033 • DOI: 10.18730/HHEJR

42. WAB0025715 • Oryza sativa L. subsp. indica S.Kato • TOS 8445 • Traditional cultivar/Landrace • TZA

CIV033 • DOI: 10.18730/HJG8X

43. WAB0030291 • Oryza sativa L. subsp. indica S.Kato • SAHEL 177 • Advanced/improved cultivar • SEN

CIV033 • DOI: 10.18730/HKVVJ

44. WAB0030292 • Oryza sativa L. subsp. indica S.Kato • SAHEL 208 • Advanced/improved cultivar • SEN

CIV033 • DOI: 10.18730/HKVWK

45. WAB0031008 • Oryza sativa L. subsp. indica S.Kato • TOS 7141 • Traditional cultivar/Landrace • SLE

CIV033 • DOI: 10.18730/HM53J

46. WAB0032234 • Oryza glaberrima Steud. • TOG 5505-A • Traditional cultivar/Landrace • NGA

CIV033 • DOI: 10.18730/HMY67

47. WAB0032721 • Oryza sativa L. subsp. indica S.Kato • CT 18232-5-9-1-2-5-1 • Breeding/Research Material • COL

CIV033 • DOI: 10.18730/HNCNT

48. WAB0033410 • Oryza sativa L. subsp. indica S.Kato • CC 107 • Traditional cultivar/Landrace • BFA

CIV033 • DOI: 10.18730/HNXB5

49. WAB0034575 • Oryza sativa L. subsp. japonica S.Kato • TOS 7009-A • Traditional cultivar/Landrace • SLE

CIV033 • DOI: 10.18730/HPQT1

50. WAB0037309 • Oryza sativa L. subsp. indica S.Kato • BDI14-144 • Traditional cultivar/Landrace • BDI

CIV033 • DOI: 10.18730/SCFDU