Revised Bacterial blight (BLB) resistant Oryza glaberrima and Oryza sativa germplasms.

Bacterial blight is one of the most devastating diseases in many rice-growing regions and can result in yield losses of up to 50% in West Africa. It is caused by various pathogens of Xanthomonas oryzae pv. oryzae (Xoo). Resistance to bacterial blight is determined by both race-specific genes and quantitative trait loci, with over 45 race-specific resistance genes (designated with the prefixes Xa or xa for Xanthomonas) reported by Neelam et al., (2020). The Rice Biodiversity Center for Africa (RBCA) team identified 50 accessions that carry one or two BLB resistance QTLs using several DArTseq SNPs including xa13_1, xa13_2, chr11_21190115, xa4_2, Xa7_1, and Xa7_2, located on rice chromosomes 8, 11, and 6, respectively. This mini collection consists of 40 Oryza sativa and 10 Oryza glaberrima accessions, distinct from the previous BLB resistant minicore set published

Crop
rice
Number of accessions
50
FAO WIEWS Institute
Creation date
November 13, 2023
Published in Genesys
January 8, 2024
Subset metadata

Subset creators


Data collector
Gouda Comlan Arnaud AfricaRice
Data collector
Kpeki Sedjro Bienvenu AfricaRice
Data manager
OGWUIKE Clinton Obinna Africa Rice Center
Data curator
Gnikoua Karlin AfricaRice Center
Data collector
Marie Noelle Ndjiondjop AfricaRice

Data and resources


MCPD passport data

MCPD - 83b8c8b8-6ef6-4ca6-97c6-27db61fcde8c.xlsx

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Accessions

List of accessions included in the subset

2. WAB0000058 • Oryza sativa L. subsp. japonica S.Kato • WAB96-1-1 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/H8701
3. WAB0004142 • Oryza sativa L. subsp. indica S.Kato • RD 15 • Traditional cultivar/Landrace • Thailand
CIV033 • DOI: 10.18730/H979=
4. WAB0004201 • Oryza sativa L. subsp. indica S.Kato • TOX 3095-71-1-3-2 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/H98H1
5. WAB0004298 • Oryza sativa L. subsp. indica S.Kato • AMINA NJAI MANO • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/H9AJX
6. WAB0004871 • Oryza sativa L. subsp. indica S.Kato • TOX 3519-45-1-2-1 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/H9TDJ
7. WAB0006241 • Oryza sativa L. subsp. indica S.Kato • SIK P5-0-4-3-5-2-4 • Advanced/improved cultivar • Mali
CIV033 • DOI: 10.18730/HAQ19
8. WAB0006290 • Oryza sativa L. subsp. indica S.Kato • SIK 7-4-1-2-1 • Advanced/improved cultivar • Mali
CIV033 • DOI: 10.18730/HAR8B
9. WAB0006849 • Oryza sativa L. subsp. japonica S.Kato • BASMATI 370 • Advanced/improved cultivar • India
CIV033 • DOI: 10.18730/HAYW1
10. WAB0007800 • Oryza sativa L. subsp. indica S.Kato • FAROX 304-1-1 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HBKV6
11. WAB0007879 • Oryza glaberrima Steud. • TOG 5672 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HQMGZ
12. WAB0008527 • Oryza sativa L. subsp. indica S.Kato • TOS 5257 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HC4TZ
13. WAB0008562 • Oryza sativa L. subsp. indica S.Kato • TOS 5310 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HQ6R=
14. WAB0008681 • Oryza glaberrima Steud. • TOG 5692 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HQMW6
15. WAB0008954 • Oryza sativa L. subsp. indica S.Kato • TOS 6454 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HC6ZT
16. WAB0013263 • Oryza sativa L. subsp. indica S.Kato • TOS 14268 • Traditional cultivar/Landrace • Guinea
CIV033 • DOI: 10.18730/HDW4S
17. WAB0013345 • Oryza glaberrima Steud. • YG 459 • Traditional cultivar/Landrace • Guinea
CIV033 • DOI: 10.18730/SCY4T
18. WAB0014126 • Oryza sativa L. subsp. indica S.Kato • TOS 15500 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HE92*
19. WAB0015430 • Oryza sativa L. subsp. indica S.Kato • CT 6196-33-11-2-2-3P • Advanced/improved cultivar • Colombia
CIV033 • DOI: 10.18730/HEHZN
20. WAB0015542 • Oryza sativa L. subsp. indica S.Kato • DJU KEME • Traditional cultivar/Landrace • Guinea
CIV033 • DOI: 10.18730/HEMP$
21. WAB0015563 • Oryza sativa L. subsp. indica S.Kato • FAC 906 • Traditional cultivar/Landrace • Burundi
CIV033 • DOI: 10.18730/HEN07
22. WAB0015567 • Oryza sativa L. subsp. japonica S.Kato • FARO 33 (FAROX 233-1-1-1) • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HEN29
23. WAB0016118 • Oryza sativa L. subsp. indica S.Kato • IR 57287-99-1-3 • Advanced/improved cultivar • Philippines
CIV033 • DOI: 10.18730/HF10N
24. WAB0016397 • Oryza sativa L. subsp. indica S.Kato • ITA 212 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HF7J9
25. WAB0016600 • Oryza sativa L. subsp. indica S.Kato • ROHYB 148-B-B-1-B • Advanced/improved cultivar • Sierra Leone
CIV033 • DOI: 10.18730/HFACS
26. WAB0016938 • Oryza sativa L. subsp. indica S.Kato • ROHYB 163-B-1-1-1-B • Advanced/improved cultivar • Sierra Leone
CIV033 • DOI: 10.18730/HFMFF
27. WAB0016939 • Oryza sativa L. subsp. japonica S.Kato • ROHYB 163-B-1-3-B • Advanced/improved cultivar • Sierra Leone
CIV033 • DOI: 10.18730/HFMGG
28. WAB0017141 • Oryza sativa L. subsp. indica S.Kato • ROHYB 209-B-2-B • Advanced/improved cultivar • Sierra Leone
CIV033 • DOI: 10.18730/HFTGQ
29. WAB0019347 • Oryza sativa L. subsp. indica S.Kato • WAT371-TGR-2-3 • Breeding/Research Material • Nigeria
CIV033 • DOI: 10.18730/HGAPQ
30. WAB0019750 • Oryza sativa L. subsp. indica S.Kato • NERICA-L-54 • Advanced/improved cultivar • Senegal
CIV033 • DOI: 10.18730/SCN3~
31. WAB0020078 • Oryza glaberrima Steud. • TOG 5681 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HGS22
32. WAB0020113 • Oryza glaberrima Steud. • TOG 5418 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HQ8BC
33. WAB0020143 • Oryza glaberrima Steud. • TOG 5691 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HQNBN
34. WAB0020603 • Oryza glaberrima Steud. • TOG 8535 • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HGVE4
35. WAB0020854 • Oryza glaberrima Steud. • TOG 12136 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/SC9S4
36. WAB0021280 • Oryza sativa L. subsp. indica S.Kato • Jalmagna • Traditional cultivar/Landrace • India
CIV033 • DOI: 10.18730/HH2MC
37. WAB0021404 • Oryza glaberrima Steud. • TOG 15105 • Traditional cultivar/Landrace • Guinea
CIV033 • DOI: 10.18730/SEHF4
38. WAB0021566 • Oryza sativa L. subsp. indica S.Kato • TOG 10985 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HH4WA
39. WAB0022314 • Oryza sativa L. subsp. indica S.Kato • RLOTHER N'137 AGANNI • Traditional cultivar/Landrace • India
CIV033 • DOI: 10.18730/HH876
40. WAB0023588 • Oryza sativa L. subsp. indica S.Kato • CT15021-87-2-1-1 • Advanced/improved cultivar • Colombia
CIV033 • DOI: 10.18730/HHE9F
41. WAB0023624 • Oryza sativa L. subsp. indica S.Kato • NCRO 48 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HHEJR
42. WAB0025715 • Oryza sativa L. subsp. indica S.Kato • TOS 8445 • Traditional cultivar/Landrace • Tanzania
CIV033 • DOI: 10.18730/HJG8X
43. WAB0030291 • Oryza sativa L. subsp. indica S.Kato • SAHEL 177 • Advanced/improved cultivar • Senegal
CIV033 • DOI: 10.18730/HKVVJ
44. WAB0030292 • Oryza sativa L. subsp. indica S.Kato • SAHEL 208 • Advanced/improved cultivar • Senegal
CIV033 • DOI: 10.18730/HKVWK
45. WAB0031008 • Oryza sativa L. subsp. indica S.Kato • TOS 7141 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HM53J
46. WAB0032234 • Oryza glaberrima Steud. • TOG 5505-A • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HMY67
47. WAB0032721 • Oryza sativa L. subsp. indica S.Kato • CT 18232-5-9-1-2-5-1 • Advanced/improved cultivar • Colombia
CIV033 • DOI: 10.18730/HNCNT
48. WAB0033410 • Oryza sativa L. subsp. indica S.Kato • CC 107 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HNXB5
49. WAB0034575 • Oryza sativa L. subsp. japonica S.Kato • TOS 7009-A • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HPQT1
50. WAB0037309 • Oryza sativa L. subsp. indica S.Kato • BDI14-144 • Traditional cultivar/Landrace • Burundi
CIV033 • DOI: 10.18730/SCFDU