Shared pedigree relationships and transmission of unreduced gametes in cultivated banana

Cultivars have low fertility and are vegetatively propagated, forming groups of somaclones. Relatively few of them, mainly triploids, are grown on a large scale and characterization of their parental relationships may be useful for breeding strategies. Here we investigate parental relationships and gamete-type contributions among diploid and polyploid banana cultivars. We used SNP genotyping data from whole-genome sequencing of 178 banana individuals, including 111 cultivars, 55 wild bananas and 12 synthetic F1 hybrids. We analysed the proportion of SNP sites in accordance with direct parentage with a global statistic and along chromosomes for selected individuals.

Crop
banana
Number of accessions
34
Creation date
December 21, 2023
Published in Genesys
January 8, 2024
Subset metadata

Subset creators


Data manager
Guillaume Martin CIRAD, UMR AGAP Institut, Montpellier F-34398, France, UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
Data manager
Franc-Christophe Baurens CIRAD, UMR AGAP Institut, Montpellier F-34398, France, UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
Data manager
Karine Labadie Genoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France
Data manager
Catherine Hervouet CIRAD, UMR AGAP Institut, Montpellier F-34398, France, UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
Data manager
Frédéric Salmon UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France, CIRAD, UMR AGAP Institut, F-97130 Capesterre-Belle-Eau, Guadeloupe, France
Data manager
Franck Marius UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France, CIRAD, UMR AGAP Institut, F-97130 Capesterre-Belle-Eau, Guadeloupe, France
Data manager
Nilda Paulo-de-la-Reberdiere UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France, CIRAD, UMR AGAP Institut, CRB-PT, F-97170 Roujol Petit-Bourg, Guadeloupe, France
Not specified
Ines Van den Houwe Bioversity International, Willem De Croylaan 42, B-3001, Leuven, Belgium
Data manager
Jean-Marc Aury Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France
Data manager
Angélique D’Hont CIRAD, UMR AGAP Institut, Montpellier F-34398, France, UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
Data manager
Nabila Yahiaoui CIRAD, UMR AGAP Institut, Montpellier F-34398, France, UMR AGAP Institut, Université Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France

Data and resources


MCPD passport data

MCPD - c55caae5-d6a6-4291-8145-c0a132986f35.xlsx

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Accessions

List of accessions included in the subset

2. ITC0078 • Musa aaa • Wh-o-gu • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9J96T
3. ITC0415 • Musa acuminata Colla • Pisang Cici Alas • Wild • Indonesia
BEL084 • DOI: 10.18730/9JX5U
4. ITC0434 • Musa aa • Racadag • Traditional cultivar/Landrace • Philippines
BEL084 • DOI: 10.18730/9JXYR
BEL084 • DOI: 10.18730/9K06P
6. ITC0568 • Musa aa • Malaysian Blood • Traditional cultivar/Landrace
BEL084 • DOI: 10.18730/9K6E0
7. ITC0589 • Musa aa • Gulum • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: N/A
8. ITC0599 • Musa schizocarpa N. W. Simmonds • Schizocarpa • Wild • Papua New Guinea
BEL084 • DOI: 10.18730/9K8AQ
10. ITC0778 • Musa aa • Gorop • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9KHEK
11. ITC0785 • Musa aa • Aivip • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9KHW~
12. ITC0786 • Musa aa • Katual no.2 • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9KHY=
13. ITC0810 • Musa aa • Sihir • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9KKTN
14. ITC0822 • Musa as • Tonton Kepa • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9KMQD
15. ITC0885 • Musa acuminata subsp. banksii N. W. Simmonds • Musa acuminata ssp. banksii • Wild • Papua New Guinea
BEL084 • DOI: 10.18730/9KS46
16. ITC0897 • Musa acuminata subsp. banksii N. W. Simmonds • Musa acuminata ssp. banksii • Wild • Papua New Guinea
BEL084 • DOI: 10.18730/9KTC9
17. ITC0917 • Musa peekelii subsp. peekelii • Musa peekelii ssp. peekelii • Wild • Papua New Guinea
BEL084 • DOI: 10.18730/9KVMC
18. ITC0926 • Musa schizocarpa N. W. Simmonds • Schizocarpa • Wild • Papua New Guinea
BEL084 • DOI: 10.18730/9KW4W
19. ITC0946 • Musa aaa • Merik • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9KXK1
20. ITC0956 • Musa lolodensis Cheesman • Musa lolodensis • Wild • Papua New Guinea
BEL084 • DOI: 10.18730/9KYEW
21. ITC0996 • Musa aa • Manameg Red • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9M0GM
22. ITC1013 • Musa aa • Sena • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9M1BA
23. ITC1028 • Musa acuminata Colla • Agutay • Wild
BEL084 • DOI: 10.18730/9M2C6
24. ITC1031 • Musa aa • Veinte Cohol • Traditional cultivar/Landrace
BEL084 • DOI: 10.18730/9M2E8
25. ITC1187 • Musa aa • Tomolo • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9M9FB
26. ITC1206 • Musa aa • Spiral • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9MAWK
27. ITC1211 • Musa aa • Vudu Beo • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9MB8Z
28. ITC1245 • Musa aa • Papat • Traditional cultivar/Landrace • Papua New Guinea
BEL084 • DOI: 10.18730/9MDCS
BEL084 • DOI: 10.18730/9MPZU
30. ITC1346 • Musa acuminata subsp. malaccensis (Ridl.) N. W. Simmonds • Pisang Karok 391 • Wild • Malaysia
BEL084 • DOI: 10.18730/9MM0F
31. ITC1348 • Musa acuminata subsp. malaccensis (Ridl.) N. W. Simmonds • Pisang Serun 404 • Wild • Malaysia
BEL084 • DOI: 10.18730/9MM3J
32. ITC1349 • Musa acuminata subsp. malaccensis (Ridl.) N. W. Simmonds • Pisang Serun 400 • Wild • Malaysia
BEL084 • DOI: 10.18730/9MM5M
33. ITC1701 • Musa acuminata Colla • Musa acuminata sp.sumatrana • Wild • Indonesia
BEL084 • DOI: 10.18730/9NDDE
34. ITC1704 • Musa sp. • Kole • Other
BEL084 • DOI: 10.18730/9NDMN