Revised identification of zinc-rich rice accessions using XRF analysis in O. glaberrima and O. sativa minicore collections

Micronutrient deficiency is increasingly recognized as a major challenge for food and nutrition security, particularly in developing countries. There is a growing global consensus on the need for food-based approaches to improve micronutrient intake. The extensive genetic diversity conserved in plant genetic resources offers important opportunities to identify micronutrient-rich genotypes that can be used directly for consumption or incorporated into breeding programs. Zinc concentration in unpolished brown rice typically ranges from 14.5 to 35.3 mg/kg (Maganti et al., 2020).

In this study, the authors assessed the nutritional composition of 926 accessions from the Oryza glaberrima and Oryza sativa minicore collections using X-ray fluorescence (XRF). They identified 143 zinc-rich accessions, including 73 from O. glaberrima and 70 from O. sativa. Zinc concentration in unpolished grains ranged from 30 to 39.5 mg/kg, with five O. glaberrima accessions showing particularly elevated levels (35–39.5 mg/kg). Compared to the previous collection, this updated dataset includes 68 additional accessions, increasing the overall representation of genetic diversity.

Type of subset
Selective
Method of selection
Trait-based phenotypic selection (based on Zn concentration measured via XRF)
Crop
rice
Number of accessions
143
FAO WIEWS Institute
Creation date
November 18, 2025
Published in Genesys
December 9, 2025
Subset metadata

Subset creators


Data collector
Arnaud Gouda Africa Rice Center
Data manager
Clinton Obinna Ogwuike Africa Rice Center
Data curator
MARIE NOEL NDJIONJOP NZENKAM Africa Rice Center

Data and resources


MCPD passport data

MCPD - d209074e-2d51-4dd1-b471-356d65c26e2a.xlsx

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Accessions

List of accessions included in the subset

2. WAB0001599Oryza sativa L. subsp. japonica S.Kato • TOG 6397 • Traditional cultivar/LandraceLiberia
CIV033 • DOI: 10.18730/SEA2T
3. WAB0004217Oryza sativa L. subsp. indica S.Kato • TOX 3133-11-1-3-1-1-1-1 • Breeding/Research MaterialNigeria
CIV033 • DOI: 10.18730/H98ZF
4. WAB0004692Oryza sativa L. subsp. indica S.Kato • CHOKOTO • Traditional cultivar/LandraceJapan
CIV033 • DOI: 10.18730/H9NKC
5. WAB0004806Oryza sativa L. subsp. indica S.Kato • DOM SOFOOD • Traditional cultivar/LandraceIran
CIV033 • DOI: 10.18730/H9RZ9
6. WAB0007050Oryza sativa L. subsp. japonica S.Kato • WAB306-B-B-6-L2-L1-LB • Advanced/improved cultivarIvory Coast
CIV033 • DOI: 10.18730/HB4Q3
7. WAB0007088Oryza sativa L. subsp. japonica S.Kato • WAB519-55-3 • Advanced/improved cultivarIvory Coast
CIV033 • DOI: 10.18730/HB5T1
8. WAB0007101Oryza sativa L. subsp. japonica S.Kato • IDSA 85 • Advanced/improved cultivarIvory Coast
CIV033 • DOI: 10.18730/HB67E
9. WAB0007125Oryza sativa L. subsp. indica S.Kato • INDIAN NDINGO • Traditional cultivar/LandraceThe Gambia
CIV033 • DOI: 10.18730/HB6Z1
10. WAB0007127Oryza sativa L. subsp. indica S.Kato • KONSUNKUTO MANO • Traditional cultivar/LandraceThe Gambia
CIV033 • DOI: 10.18730/HB713
11. WAB0007739Oryza sativa L. subsp. japonica S.Kato • NERICA 1 • Advanced/improved cultivarIvory Coast
CIV033 • DOI: 10.18730/SCPTE
12. WAB0008153Oryza sativa L. subsp. indica S.Kato • TOS 472 • Traditional cultivar/LandracePalau
CIV033 • DOI: 10.18730/HBVS1
13. WAB0008159Oryza sativa L. subsp. indica S.Kato • TOS 480 • Traditional cultivar/LandraceVenezuela
CIV033 • DOI: 10.18730/HBVZ7
14. WAB0008207Oryza sativa L. subsp. indica S.Kato • TOS 662 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HBX47
15. WAB0008210Oryza sativa L. subsp. indica S.Kato • TOS 665 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HBX7A
16. WAB0008254Oryza sativa L. subsp. indica S.Kato • TOS 846 • Traditional cultivar/LandraceThe Gambia
CIV033 • DOI: 10.18730/HBY42
17. WAB0008292Oryza sativa L. subsp. indica S.Kato • TOS 1143 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HBYKH
18. WAB0008294Oryza sativa L. subsp. indica S.Kato • TOS 1304 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HBYNK
19. WAB0008329Oryza sativa L. subsp. indica S.Kato • TOS 3284 • Traditional cultivar/LandraceSuriname
CIV033 • DOI: 10.18730/HBZJB
20. WAB0008618Oryza sativa L. subsp. indica S.Kato • TOS 5525 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HQ9RM
21. WAB0008720Oryza sativa L. subsp. indica S.Kato • TOS 5745 • Traditional cultivar/LandraceLiberia
CIV033 • DOI: 10.18730/HQGJG
22. WAB0008756Oryza sativa L. subsp. indica S.Kato • TOS 5798 • Traditional cultivar/LandraceLiberia
CIV033 • DOI: 10.18730/HQCG$
23. WAB0008759Oryza sativa L. subsp. indica S.Kato • TOS 5804 • Traditional cultivar/LandraceLiberia
CIV033 • DOI: 10.18730/HQEDN
24. WAB0008820Oryza sativa L. subsp. indica S.Kato • TOS 5893 • Traditional cultivar/LandraceLiberia
CIV033 • DOI: 10.18730/HQK7V
25. WAB0008843Oryza sativa L. subsp. indica S.Kato • TOS 5918 • Traditional cultivar/LandraceLiberia
CIV033 • DOI: 10.18730/HQM2H
26. WAB0009004Oryza sativa L. subsp. japonica S.Kato • TOS 6847 • Traditional cultivar/LandraceZimbabwe
CIV033 • DOI: 10.18730/HC7RE
27. WAB0009009Oryza sativa L. subsp. indica S.Kato • TOS 6852 • Traditional cultivar/LandraceZimbabwe
CIV033 • DOI: 10.18730/HC7WJ
28. WAB0009259Oryza sativa L. subsp. indica S.Kato • TOS 7346 • Traditional cultivar/LandraceSuriname
CIV033 • DOI: 10.18730/HCCFH
29. WAB0009435Oryza sativa L. subsp. indica S.Kato • TOS 7610 • Traditional cultivar/LandraceCameroon
CIV033 • DOI: 10.18730/HCFTD
30. WAB0009506Oryza sativa L. subsp. indica S.Kato • TOS 7722 • Traditional cultivar/LandraceTanzania
CIV033 • DOI: 10.18730/HCHDV
31. WAB0009524Oryza sativa L. subsp. indica S.Kato • TOS 7748 • Traditional cultivar/LandraceTanzania
CIV033 • DOI: 10.18730/HCHY7
32. WAB0009832Oryza sativa L. subsp. indica S.Kato • TOS 8190 • Traditional cultivar/LandraceIvory Coast
CIV033 • DOI: 10.18730/HCSJX
33. WAB0010299Oryza sativa L. subsp. japonica S.Kato • TOS 8969 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HCYXF
34. WAB0010648Oryza sativa L. subsp. indica S.Kato • TOS 9658 • Traditional cultivar/LandraceIvory Coast
CIV033 • DOI: 10.18730/HD45=
35. WAB0010715Oryza sativa L. subsp. indica S.Kato • TOS 9800 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HD5XH
36. WAB0010729Oryza sativa L. subsp. indica S.Kato • TOS 9820 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HD6BZ
37. WAB0012084Oryza sativa L. subsp. indica S.Kato • TOS 12643 • Traditional cultivar/LandraceMalaysia
CIV033 • DOI: 10.18730/HDHHK
38. WAB0012099Oryza sativa L. subsp. japonica S.Kato • TOS 12667 • Traditional cultivar/LandraceColombia
CIV033 • DOI: 10.18730/SD2RT
39. WAB0012102Oryza sativa L. subsp. indica S.Kato • TOS 12670 • Traditional cultivar/LandraceNigeria
CIV033 • DOI: 10.18730/HDHY*
40. WAB0012103Oryza sativa L. subsp. japonica S.Kato • TOS 12671 • Traditional cultivar/LandraceIndia
CIV033 • DOI: 10.18730/HDHZ~
41. WAB0014150Oryza sativa L. subsp. indica S.Kato • TOS 15532 • Traditional cultivar/LandraceBurkina Faso
CIV033 • DOI: 10.18730/HE9MD
42. WAB0014748Oryza sativa L. subsp. indica S.Kato • TOS 16393 • Traditional cultivar/LandraceBotswana
CIV033 • DOI: 10.18730/HEE49
43. WAB0015574Oryza sativa L. subsp. indica S.Kato • FAROX 299 (ROK 19) • Advanced/improved cultivarNigeria
CIV033 • DOI: 10.18730/HEN5C
44. WAB0015789Oryza sativa L. subsp. indica S.Kato • IR 29708-23-1-2-2 • Breeding/Research MaterialPhilippines
CIV033 • DOI: 10.18730/HES1S
45. WAB0016662Oryza sativa L. subsp. japonica S.Kato • ROHYB 149-B-B-11-B • Breeding/Research MaterialSierra Leone
CIV033 • DOI: 10.18730/HFC9C
46. WAB0017031Oryza sativa L. subsp. indica S.Kato • ROHYB 165-B-9-B • Breeding/Research MaterialSierra Leone
CIV033 • DOI: 10.18730/HFQ6W
47. WAB0018092Oryza sativa L. subsp. japonica S.Kato • NERICA 6 • Advanced/improved cultivarIvory Coast
CIV033 • DOI: 10.18730/SCPF3
48. WAB0018102Oryza sativa L. subsp. japonica S.Kato • NERICA 4 • Advanced/improved cultivarIvory Coast
CIV033 • DOI: 10.18730/SCPG4
49. WAB0019532Oryza sativa L. subsp. indica S.Kato • WAT83-TGR-3-4 • Breeding/Research MaterialNigeria
CIV033 • DOI: 10.18730/HGFCS
50. WAB0019622Oryza sativa L. subsp. japonica S.Kato • NERICA 13 • Advanced/improved cultivarIvory Coast
CIV033 • DOI: 10.18730/SCPPA