Revised identification of zinc-rich rice accessions using XRF analysis in O. glaberrima and O. sativa minicore collections

Micronutrient deficiency is increasingly recognized as a major challenge for food and nutrition security, particularly in developing countries. There is a growing global consensus on the need for food-based approaches to improve micronutrient intake. The extensive genetic diversity conserved in plant genetic resources offers important opportunities to identify micronutrient-rich genotypes that can be used directly for consumption or incorporated into breeding programs. Zinc concentration in unpolished brown rice typically ranges from 14.5 to 35.3 mg/kg (Maganti et al., 2020).

In this study, the authors assessed the nutritional composition of 926 accessions from the Oryza glaberrima and Oryza sativa minicore collections using X-ray fluorescence (XRF). They identified 143 zinc-rich accessions, including 73 from O. glaberrima and 70 from O. sativa. Zinc concentration in unpolished grains ranged from 30 to 39.5 mg/kg, with five O. glaberrima accessions showing particularly elevated levels (35–39.5 mg/kg). Compared to the previous collection, this updated dataset includes 68 additional accessions, increasing the overall representation of genetic diversity.

Type of subset
Selective
Method of selection
Trait-based phenotypic selection (based on Zn concentration measured via XRF)
Crop
rice
Number of accessions
143
FAO WIEWS Institute
Creation date
November 18, 2025
Published in Genesys
December 9, 2025
Subset metadata

Subset creators


Data collector
Arnaud Gouda Africa Rice Center
Data manager
Clinton Obinna Ogwuike Africa Rice Center
Data curator
MARIE NOEL NDJIONJOP NZENKAM Africa Rice Center

Data and resources


MCPD passport data

MCPD - d209074e-2d51-4dd1-b471-356d65c26e2a.xlsx

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Accessions

List of accessions included in the subset

2. WAB0001599 • Oryza sativa L. subsp. japonica S.Kato • TOG 6397 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/SEA2T
3. WAB0004217 • Oryza sativa L. subsp. indica S.Kato • TOX 3133-11-1-3-1-1-1-1 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/H98ZF
4. WAB0004692 • Oryza sativa L. subsp. indica S.Kato • CHOKOTO • Traditional cultivar/Landrace • Japan
CIV033 • DOI: 10.18730/H9NKC
5. WAB0004806 • Oryza sativa L. subsp. indica S.Kato • DOM SOFOOD • Traditional cultivar/Landrace • Iran
CIV033 • DOI: 10.18730/H9RZ9
6. WAB0007050 • Oryza sativa L. subsp. japonica S.Kato • WAB306-B-B-6-L2-L1-LB • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HB4Q3
7. WAB0007088 • Oryza sativa L. subsp. japonica S.Kato • WAB519-55-3 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HB5T1
8. WAB0007101 • Oryza sativa L. subsp. japonica S.Kato • IDSA 85 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HB67E
9. WAB0007125 • Oryza sativa L. subsp. indica S.Kato • INDIAN NDINGO • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HB6Z1
10. WAB0007127 • Oryza sativa L. subsp. indica S.Kato • KONSUNKUTO MANO • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HB713
11. WAB0007739 • Oryza sativa L. subsp. japonica S.Kato • NERICA 1 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPTE
12. WAB0008153 • Oryza sativa L. subsp. indica S.Kato • TOS 472 • Traditional cultivar/Landrace • Palau
CIV033 • DOI: 10.18730/HBVS1
13. WAB0008159 • Oryza sativa L. subsp. indica S.Kato • TOS 480 • Traditional cultivar/Landrace • Venezuela
CIV033 • DOI: 10.18730/HBVZ7
14. WAB0008207 • Oryza sativa L. subsp. japonica S.Kato • TOS 662 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HBX47
15. WAB0008210 • Oryza sativa L. subsp. indica S.Kato • TOS 665 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HBX7A
16. WAB0008254 • Oryza sativa L. subsp. indica S.Kato • TOS 846 • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HBY42
17. WAB0008292 • Oryza sativa L. subsp. indica S.Kato • TOS 1143 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HBYKH
18. WAB0008294 • Oryza sativa L. subsp. indica S.Kato • TOS 1304 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HBYNK
19. WAB0008329 • Oryza sativa L. subsp. indica S.Kato • TOS 3284 • Traditional cultivar/Landrace • Suriname
CIV033 • DOI: 10.18730/HBZJB
20. WAB0008618 • Oryza sativa L. subsp. indica S.Kato • TOS 5525 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HQ9RM
21. WAB0008720 • Oryza sativa L. subsp. indica S.Kato • TOS 5745 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQGJG
22. WAB0008756 • Oryza sativa L. subsp. indica S.Kato • TOS 5798 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQCG$
23. WAB0008759 • Oryza sativa L. subsp. indica S.Kato • TOS 5804 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQEDN
24. WAB0008820 • Oryza sativa L. subsp. indica S.Kato • TOS 5893 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQK7V
25. WAB0008843 • Oryza sativa L. subsp. indica S.Kato • TOS 5918 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQM2H
26. WAB0009004 • Oryza sativa L. subsp. japonica S.Kato • TOS 6847 • Traditional cultivar/Landrace • Zimbabwe
CIV033 • DOI: 10.18730/HC7RE
27. WAB0009009 • Oryza sativa L. subsp. indica S.Kato • TOS 6852 • Traditional cultivar/Landrace • Zimbabwe
CIV033 • DOI: 10.18730/HC7WJ
28. WAB0009259 • Oryza sativa L. subsp. japonica S.Kato • TOS 7346 • Traditional cultivar/Landrace • Suriname
CIV033 • DOI: 10.18730/HCCFH
29. WAB0009435 • Oryza sativa L. subsp. indica S.Kato • TOS 7610 • Traditional cultivar/Landrace • Cameroon
CIV033 • DOI: 10.18730/HCFTD
30. WAB0009506 • Oryza sativa L. subsp. indica S.Kato • TOS 7722 • Traditional cultivar/Landrace • Tanzania
CIV033 • DOI: 10.18730/HCHDV
31. WAB0009524 • Oryza sativa L. subsp. indica S.Kato • TOS 7748 • Traditional cultivar/Landrace • Tanzania
CIV033 • DOI: 10.18730/HCHY7
32. WAB0009832 • Oryza sativa L. subsp. indica S.Kato • TOS 8190 • Traditional cultivar/Landrace • Ivory Coast
CIV033 • DOI: 10.18730/HCSJX
33. WAB0010299 • Oryza sativa L. subsp. japonica S.Kato • TOS 8969 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HCYXF
34. WAB0010648 • Oryza sativa L. subsp. indica S.Kato • TOS 9658 • Traditional cultivar/Landrace • Ivory Coast
CIV033 • DOI: 10.18730/HD45=
35. WAB0010715 • Oryza sativa L. subsp. indica S.Kato • TOS 9800 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HD5XH
36. WAB0010729 • Oryza sativa L. subsp. indica S.Kato • TOS 9820 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HD6BZ
37. WAB0012084 • Oryza sativa L. subsp. indica S.Kato • TOS 12643 • Traditional cultivar/Landrace • Malaysia
CIV033 • DOI: 10.18730/HDHHK
38. WAB0012099 • Oryza sativa L. subsp. japonica S.Kato • TOS 12667 • Traditional cultivar/Landrace • Colombia
CIV033 • DOI: 10.18730/SD2RT
39. WAB0012102 • Oryza sativa L. subsp. indica S.Kato • TOS 12670 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HDHY*
40. WAB0012103 • Oryza sativa L. subsp. japonica S.Kato • TOS 12671 • Traditional cultivar/Landrace • India
CIV033 • DOI: 10.18730/HDHZ~
41. WAB0014150 • Oryza sativa L. subsp. indica S.Kato • TOS 15532 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HE9MD
42. WAB0014748 • Oryza sativa L. subsp. indica S.Kato • TOS 16393 • Traditional cultivar/Landrace • Botswana
CIV033 • DOI: 10.18730/HEE49
43. WAB0015574 • Oryza sativa L. subsp. indica S.Kato • FAROX 299 (ROK 19) • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HEN5C
44. WAB0015789 • Oryza sativa L. subsp. indica S.Kato • IR 29708-23-1-2-2 • Advanced/improved cultivar • Philippines
CIV033 • DOI: 10.18730/HES1S
45. WAB0016662 • Oryza sativa L. subsp. japonica S.Kato • ROHYB 149-B-B-11-B • Advanced/improved cultivar • Sierra Leone
CIV033 • DOI: 10.18730/HFC9C
46. WAB0017031 • Oryza sativa L. subsp. indica S.Kato • ROHYB 165-B-9-B • Advanced/improved cultivar • Sierra Leone
CIV033 • DOI: 10.18730/HFQ6W
47. WAB0018092 • Oryza sativa L. subsp. japonica S.Kato • NERICA 6 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPF3
48. WAB0018102 • Oryza sativa L. subsp. japonica S.Kato • NERICA 4 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPG4
49. WAB0019532 • Oryza sativa L. subsp. indica S.Kato • WAT83-TGR-3-4 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HGFCS
50. WAB0019622 • Oryza sativa L. subsp. japonica S.Kato • NERICA 13 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPPA