Oryza sativa with desirable grain size

Grain size is measured in terms of either grain weight or shape, which includes grain length (GL) and grain width (GW). It is a critical component of crop yield and a significant trait for visual quality (Xing & Zhang, 2010). Different local cultures and cuisines prefer varying grain sizes. Grain size characteristics, immediately discernible to consumers, play a substantial role in defining market value (Fitzgerald et al., 2009; Lu et al., 2013). It has been reported that the QTL for seed width 5 (qSW5) is the most important QTL for grain width and grain weight, situated on chromosome 5 (Lu et al., 2013). Additionally, grain size 3 (GS3, orthologue to OsGS3) is one of the major QTLs located on chromosome 3 that regulates rice grain size (Fan et al., 2006; Takano-Kai et al., 2009; Kumar et al., 2016). GW5 is also a major QTL associated with rice grain width and weight (Weng et al., 2008; Dwivedi et al., 2019). qSW5, GS3, and GW5 are the primary determinants of grain size dimensions. Using the 1k RiCA mid-density genotyping panel for rice (Arbalaez et al., 2019), which includes the DarTSNPs GW3, GW5_1, and GW5_2 located on chromosomes 3 and 5, respectively, the Rice Biodiversity Center for Africa (RBCA) team conducted genotyping of 593 Oryza sp. accessions through DArTseq-based genotyping by sequencing (GBS) technology. The results enabled them to identify a subset of 38 accessions possessing the GS3 and GW5/qSW5 genes that control rice grain size. The accessions representing this mini collection come from 17 countries.

Crop
Rice
Number of accessions
38
FAO WIEWS Institute
Creation date
13 November 2023
Published in Genesys
8 January 2024
Subset metadata

Subset creators


Data manager
OGWUIKE Clinton Obinna Africa Rice Center

Data and resources


MCPD passport data

MCPD - dfdfa359-6cdd-44d0-892c-55b92915b024.xlsx

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Accessions

List of accessions included in the subset

2. WAB0000058Oryza sativa L. subsp. japonica S.Kato • WAB96-1-1 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/H8701
3. WAB0001503Oryza sativa L. subsp. indica S.Kato • TOG 6297 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8EVY
4. WAB0004053Oryza sativa L. subsp. japonica S.Kato • ITA 150 • Advanced/improved cultivar • NGA
CIV033 • DOI: 10.18730/H95YX
5. WAB0004076Oryza sativa L. subsp. japonica S.Kato • LAC 23 (ROK 17) • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H96E8
6. WAB0004298Oryza sativa L. subsp. indica S.Kato • AMINA NJAI MANO • Traditional cultivar/Landrace • GMB
CIV033 • DOI: 10.18730/H9AJX
7. WAB0007089Oryza sativa L. subsp. japonica S.Kato • WAB506-125-3 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/HB5V2
8. WAB0007142Oryza sativa L. subsp. indica S.Kato • CO 39 • Traditional cultivar/Landrace • IND
CIV033 • DOI: 10.18730/HB7GJ
9. WAB0007262Oryza sativa L. subsp. japonica S.Kato • WAB492-81-2 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/HBASC
10. WAB0007739Oryza sativa L. subsp. japonica S.Kato • NERICA 1 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/SCPTE
11. WAB0007899Oryza sativa L. subsp. japonica S.Kato • WAB583-6-1 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/HBP12
12. WAB0008100Oryza sativa L. subsp. indica S.Kato • TOS 404 • Traditional cultivar/Landrace • AUS
CIV033 • DOI: 10.18730/HBT8T
13. WAB0008148Oryza sativa L. subsp. indica S.Kato • TOS 7365 • Traditional cultivar/Landrace • PER
CIV033 • DOI: 10.18730/SCJGR
14. WAB0008159Oryza sativa L. subsp. indica S.Kato • TOS 480 • Traditional cultivar/Landrace • VEN
CIV033 • DOI: 10.18730/HBVZ7
15. WAB0008329Oryza sativa L. subsp. indica S.Kato • TOS 3284 • Traditional cultivar/Landrace • SUR
CIV033 • DOI: 10.18730/HBZJB
16. WAB0008527Oryza sativa L. subsp. indica S.Kato • TOS 5257 • Traditional cultivar/Landrace • SLE
CIV033 • DOI: 10.18730/HC4TZ
17. WAB0008759Oryza sativa L. subsp. indica S.Kato • TOS 5804 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/HQEDN
18. WAB0009435Oryza sativa L. subsp. indica S.Kato • TOS 7610 • Traditional cultivar/Landrace • CMR
CIV033 • DOI: 10.18730/HCFTD
19. WAB0009567Oryza sativa L. subsp. indica S.Kato • TOS 7803 • Traditional cultivar/Landrace • CIV
CIV033 • DOI: 10.18730/HCJS$
20. WAB0009605Oryza sativa L. subsp. indica S.Kato • TOS 7841 • Traditional cultivar/Landrace • CIV
CIV033 • DOI: 10.18730/HCKZ=
21. WAB0010107Oryza sativa L. subsp. indica S.Kato • TOS 8673 • Traditional cultivar/Landrace • GMB
CIV033 • DOI: 10.18730/HCVKM
22. WAB0010300Oryza sativa L. subsp. indica S.Kato • TOS 8970 • Traditional cultivar/Landrace • NGA
CIV033 • DOI: 10.18730/HCYYG
23. WAB0012084Oryza sativa L. subsp. indica S.Kato • TOS 12643 • Traditional cultivar/Landrace • MYS
CIV033 • DOI: 10.18730/HDHHK
24. WAB0014150Oryza sativa L. subsp. indica S.Kato • TOS 15532 • Traditional cultivar/Landrace • BFA
CIV033 • DOI: 10.18730/HE9MD
25. WAB0015471Oryza sativa L. subsp. indica S.Kato • CT 7127-32-1-3-2-1P • Breeding/Research Material • COL
CIV033 • DOI: 10.18730/HEJWD
26. WAB0018095Oryza sativa L. subsp. japonica S.Kato • NERICA 7 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/SCPE2
27. WAB0018102Oryza sativa L. subsp. japonica S.Kato • NERICA 4 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/SCPG4
28. WAB0018253Oryza sativa L. subsp. japonica S.Kato • WAB56-50 (FKR 37) • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/HG17G
29. WAB0018977Oryza sativa L. subsp. indica S.Kato • WAT110-TGR-1-1 • Breeding/Research Material • NGA
CIV033 • DOI: 10.18730/HG66V
30. WAB0019044Oryza sativa L. subsp. indica S.Kato • WAT1214-B • Breeding/Research Material • NGA
CIV033 • DOI: 10.18730/HG7AT
31. WAB0023588Oryza sativa L. subsp. indica S.Kato • CT15021-87-2-1-1 • Breeding/Research Material • COL
CIV033 • DOI: 10.18730/HHE9F
32. WAB0024915Oryza sativa L. subsp. indica S.Kato • TOS 5727 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/HQNDQ
33. WAB0027170Oryza sativa L. subsp. indica S.Kato • TOS 6933 • Traditional cultivar/Landrace • SLE
CIV033 • DOI: 10.18730/HQE19
34. WAB0029457Oryza sativa L. subsp. indica S.Kato • TOS 14225-B • Traditional cultivar/Landrace • GIN
CIV033 • DOI: 10.18730/HKM0T
35. WAB0031829Oryza sativa L. subsp. indica S.Kato • IR 841 • Advanced/improved cultivar • PHL
CIV033 • DOI: 10.18730/HMQJH
36. WAB0034575Oryza sativa L. subsp. japonica S.Kato • TOS 7009-A • Traditional cultivar/Landrace • SLE
CIV033 • DOI: 10.18730/HPQT1
37. WAB0034964Oryza sativa L. subsp. japonica S.Kato • ARICA 4 • Advanced/improved cultivar • BEN
CIV033 • DOI: 10.18730/SCGE*
38. WAB0039288Oryza sativa L. subsp. indica S.Kato • CMR 14-129 • Traditional cultivar/Landrace • CMR
CIV033 • DOI: 10.18730/SEJM4