Oryza sativa with desirable grain size

Grain size is measured in terms of either grain weight or shape, which includes grain length (GL) and grain width (GW). It is a critical component of crop yield and a significant trait for visual quality (Xing & Zhang, 2010). Different local cultures and cuisines prefer varying grain sizes. Grain size characteristics, immediately discernible to consumers, play a substantial role in defining market value (Fitzgerald et al., 2009; Lu et al., 2013). It has been reported that the QTL for seed width 5 (qSW5) is the most important QTL for grain width and grain weight, situated on chromosome 5 (Lu et al., 2013). Additionally, grain size 3 (GS3, orthologue to OsGS3) is one of the major QTLs located on chromosome 3 that regulates rice grain size (Fan et al., 2006; Takano-Kai et al., 2009; Kumar et al., 2016). GW5 is also a major QTL associated with rice grain width and weight (Weng et al., 2008; Dwivedi et al., 2019). qSW5, GS3, and GW5 are the primary determinants of grain size dimensions. Using the 1k RiCA mid-density genotyping panel for rice (Arbalaez et al., 2019), which includes the DarTSNPs GW3, GW5_1, and GW5_2 located on chromosomes 3 and 5, respectively, the Rice Biodiversity Center for Africa (RBCA) team conducted genotyping of 593 Oryza sp. accessions through DArTseq-based genotyping by sequencing (GBS) technology. The results enabled them to identify a subset of 38 accessions possessing the GS3 and GW5/qSW5 genes that control rice grain size. The accessions representing this mini collection come from 17 countries.

Crop
rice
Number of accessions
38
FAO WIEWS Institute
Creation date
November 13, 2023
Published in Genesys
January 8, 2024
Subset metadata

Subset creators


Data collector
Gouda Comlan Arnaud AfricaRice
Data collector
Kpeki Sedjro Bienvenu AfricaRice
Data curator
Marie-Noelle Ndjiondjop Africa Rice Center
Data curator
Gnikoua Karlin AfricaRice Center
Data manager
OGWUIKE Clinton Obinna Africa Rice Center

Data and resources


MCPD passport data

MCPD - dfdfa359-6cdd-44d0-892c-55b92915b024.xlsx

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Accessions

List of accessions included in the subset

2. WAB0000058 • Oryza sativa L. subsp. japonica S.Kato • WAB96-1-1 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/H8701
3. WAB0001503 • Oryza sativa L. subsp. indica S.Kato • TOG 6297 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8EVY
4. WAB0004053 • Oryza sativa L. subsp. japonica S.Kato • ITA 150 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/H95YX
5. WAB0004076 • Oryza sativa L. subsp. japonica S.Kato • LAC 23 (ROK 17) • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H96E8
6. WAB0004298 • Oryza sativa L. subsp. indica S.Kato • AMINA NJAI MANO • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/H9AJX
7. WAB0007089 • Oryza sativa L. subsp. japonica S.Kato • WAB506-125-3 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HB5V2
8. WAB0007142 • Oryza sativa L. subsp. indica S.Kato • CO 39 • Traditional cultivar/Landrace • India
CIV033 • DOI: 10.18730/HB7GJ
9. WAB0007262 • Oryza sativa L. subsp. japonica S.Kato • WAB492-81-2 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HBASC
10. WAB0007739 • Oryza sativa L. subsp. japonica S.Kato • NERICA 1 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPTE
11. WAB0007899 • Oryza sativa L. subsp. japonica S.Kato • WAB583-6-1 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HBP12
12. WAB0008100 • Oryza sativa L. subsp. indica S.Kato • TOS 404 • Traditional cultivar/Landrace • Australia
CIV033 • DOI: 10.18730/HBT8T
13. WAB0008148 • Oryza sativa L. subsp. japonica S.Kato • TOS 7365 • Traditional cultivar/Landrace • Peru
CIV033 • DOI: 10.18730/SCJGR
14. WAB0008159 • Oryza sativa L. subsp. indica S.Kato • TOS 480 • Traditional cultivar/Landrace • Venezuela
CIV033 • DOI: 10.18730/HBVZ7
15. WAB0008329 • Oryza sativa L. subsp. indica S.Kato • TOS 3284 • Traditional cultivar/Landrace • Suriname
CIV033 • DOI: 10.18730/HBZJB
16. WAB0008527 • Oryza sativa L. subsp. indica S.Kato • TOS 5257 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HC4TZ
17. WAB0008759 • Oryza sativa L. subsp. indica S.Kato • TOS 5804 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQEDN
18. WAB0009435 • Oryza sativa L. subsp. indica S.Kato • TOS 7610 • Traditional cultivar/Landrace • Cameroon
CIV033 • DOI: 10.18730/HCFTD
19. WAB0009567 • Oryza sativa L. subsp. indica S.Kato • TOS 7803 • Traditional cultivar/Landrace • Ivory Coast
CIV033 • DOI: 10.18730/HCJS$
20. WAB0009605 • Oryza sativa L. subsp. indica S.Kato • TOS 7841 • Traditional cultivar/Landrace • Ivory Coast
CIV033 • DOI: 10.18730/HCKZ=
21. WAB0010107 • Oryza sativa L. subsp. indica S.Kato • TOS 8673 • Traditional cultivar/Landrace • Gambia
CIV033 • DOI: 10.18730/HCVKM
22. WAB0010300 • Oryza sativa L. subsp. indica S.Kato • TOS 8970 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/HCYYG
23. WAB0012084 • Oryza sativa L. subsp. indica S.Kato • TOS 12643 • Traditional cultivar/Landrace • Malaysia
CIV033 • DOI: 10.18730/HDHHK
24. WAB0014150 • Oryza sativa L. subsp. indica S.Kato • TOS 15532 • Traditional cultivar/Landrace • Burkina Faso
CIV033 • DOI: 10.18730/HE9MD
25. WAB0015471 • Oryza sativa L. subsp. indica S.Kato • CT 7127-32-1-3-2-1P • Advanced/improved cultivar • Colombia
CIV033 • DOI: 10.18730/HEJWD
26. WAB0018095 • Oryza sativa L. subsp. japonica S.Kato • NERICA 7 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPE2
27. WAB0018102 • Oryza sativa L. subsp. japonica S.Kato • NERICA 4 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/SCPG4
28. WAB0018253 • Oryza sativa L. subsp. japonica S.Kato • WAB56-50 (FKR 37) • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/HG17G
29. WAB0018977 • Oryza sativa L. subsp. indica S.Kato • WAT110-TGR-1-1 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HG66V
30. WAB0019044 • Oryza sativa L. subsp. indica S.Kato • WAT1214-B • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/HG7AT
31. WAB0023588 • Oryza sativa L. subsp. indica S.Kato • CT15021-87-2-1-1 • Advanced/improved cultivar • Colombia
CIV033 • DOI: 10.18730/HHE9F
32. WAB0024915 • Oryza sativa L. subsp. indica S.Kato • TOS 5727 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/HQNDQ
33. WAB0027170 • Oryza sativa L. subsp. japonica S.Kato • TOS 6933 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HQE19
34. WAB0029457 • Oryza sativa L. subsp. indica S.Kato • TOS 14225-B • Traditional cultivar/Landrace • Guinea
CIV033 • DOI: 10.18730/HKM0T
35. WAB0031829 • Oryza sativa L. subsp. indica S.Kato • IR 841 • Advanced/improved cultivar • Philippines
CIV033 • DOI: 10.18730/HMQJH
36. WAB0034575 • Oryza sativa L. subsp. japonica S.Kato • TOS 7009-A • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/HPQT1
37. WAB0034964 • Oryza sativa L. subsp. japonica S.Kato • ARICA 4 • Advanced/improved cultivar • Benin
CIV033 • DOI: 10.18730/SCGE*
38. WAB0039288 • Oryza sativa L. subsp. indica S.Kato • CMR 14-129 • Traditional cultivar/Landrace • Cameroon
CIV033 • DOI: 10.18730/SEJM4