Classification of SPVD Atack in 249 Sweet Potato Accessions Using Machine Learning and Multispectral and Thermal Imagery

Disclaimer: This is a subset created from an on-going evaluation experiment and needs to be treated as preliminary data subject to validation and potential change.

This dataset presents 72 accessions classified as potentially resistant to Sweet Potato Virus Disease (SPVD). The data come from a field experiment conducted at the CIP–San Ramón station (Junín, Peru), where 249 clones from the Central Collection of the CIP Sweet Potato Germplasm Bank were evaluated under two contrasting treatments: (1) the virus zone, an environment with high viral pressure, surrounded by SPVD-infected plants to promote natural infection, and (2) the control zone, a physically isolated area protected through periodic pesticide applications to reduce vector presence. To assess SPVD severity in the clones, expert evaluators conducted periodic visual assessments of symptoms, and the total yield of each clone was recorded at harvest. Based on these evaluations, a classification table with three SPVD response categories—resistant, tolerant, and susceptible—was proposed, using as indicators the yield reduction of clones grown in the virus zone compared to the control, as well as the average severity scores from visual assessments, following the methodology described in Kreuze et al. (2024). The visual SPVD severity assessments were complemented with multispectral and thermal aerial imagery captured at solar noon, when plants experience their highest stress levels. Features extracted from the optical and thermal images, together with the SPVD attack classification table described above, were used to train machine learning models to classify the three SPVD response categories.

The 72 accessions described in this dataset correspond to those classified as potentially resistant to SPVD.

The software for classifying SPVD resistance of 249 clones from CIP Germplasm Bank is available at the following dataverse link: https://doi.org/10.21223/P3/CRYBP2

Kreuze et al. (2024). High-throughput characterization and phenotyping of resistance and tolerance to virus infection in sweetpotato. Virus Research, 339, 199276. https://doi.org/10.1016/j.virusres.2023.199276

Crop
sweetpotato
Number of accessions
72
Creation date
2025
Published in Genesys
December 9, 2025
Subset metadata

Subset creators


Data manager
Heider, Bettina International Potato Center (CIP)
Data manager
Loayza, Hildo International Potato Center (CIP)

Data and resources


MCPD passport data

MCPD - e064308b-93fa-4e94-b303-f15a3020ee20.xlsx

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Accessions

List of accessions included in the subset

2. CIP 400051 • Ipomoea batatas (L.) Lam. • Blanca • Traditional cultivar/Landrace • Argentina
PER001 • DOI: 10.18730/2D4T
3. CIP 400081 • Ipomoea batatas (L.) Lam. • Yety Carai • Traditional cultivar/Landrace • Argentina
PER001 • DOI: 10.18730/2DYF
4. CIP 400117 • Ipomoea batatas (L.) Lam. • SM A 2341 San Pedro Selec • Breeding/Research Material • Argentina
PER001 • DOI: 10.18730/2F1D
5. CIP 400146 • Ipomoea batatas (L.) Lam. • Huila Apichu • Traditional cultivar/Landrace • Bolivia
PER001 • DOI: 10.18730/2FQ=
6. CIP 400239 • Ipomoea batatas (L.) Lam. • unknown • Traditional cultivar/Landrace • Brazil
PER001 • DOI: 10.18730/2JGD
7. CIP 400242 • Ipomoea batatas (L.) Lam. • Roxa-roxa • Traditional cultivar/Landrace • Brazil
PER001 • DOI: 10.18730/2JJF
8. CIP 400292 • Ipomoea batatas (L.) Lam. • Douce Vermelia • Traditional cultivar/Landrace • Brazil
PER001 • DOI: 10.18730/2M2T
9. CIP 400329 • Ipomoea batatas (L.) Lam. • Branca • Traditional cultivar/Landrace • Brazil
PER001 • DOI: 10.18730/2N5R
10. CIP 400550 • Ipomoea batatas (L.) Lam. • Unknown • Traditional cultivar/Landrace • Costa Rica
PER001 • DOI: 10.18730/2VE3
11. CIP 400830 • Ipomoea batatas (L.) Lam. • Hoja de Pancho • Traditional cultivar/Landrace • Dominican Republic
PER001 • DOI: 10.18730/2XT5
12. CIP 401055 • Ipomoea batatas (L.) Lam. • Camote Blanco • Traditional cultivar/Landrace • Guatemala
PER001 • DOI: 10.18730/341K
13. CIP 401205 • Ipomoea batatas (L.) Lam. • Unknown • Traditional cultivar/Landrace • Mexico
PER001 • DOI: 10.18730/37WZ
14. CIP 401211 • Ipomoea batatas (L.) Lam. • Criollo de Veracruz • Traditional cultivar/Landrace • Mexico
PER001 • DOI: 10.18730/3820
15. CIP 401302 • Ipomoea batatas (L.) Lam. • Roxa • Traditional cultivar/Landrace • Paraguay
PER001 • DOI: 10.18730/3AM8
16. CIP 401307 • Ipomoea batatas (L.) Lam. • Boliviana • Traditional cultivar/Landrace • Paraguay
PER001 • DOI: 10.18730/3ASD
17. CIP 401316 • Ipomoea batatas (L.) Lam. • Yety Panambi • Traditional cultivar/Landrace • Paraguay
PER001 • DOI: 10.18730/3B2P
18. CIP 401491 • Ipomoea batatas (L.) Lam. • Traditional cultivar/Landrace • Mexico
PER001 • DOI: 10.18730/3EV*
19. CIP 420019 • Ipomoea batatas (L.) Lam. • Pedro • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/3THU
20. CIP 420255 • Ipomoea batatas (L.) Lam. • Dulce • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/41S9
21. CIP 420511 • Ipomoea batatas (L.) Lam. • Camote No Tengas Pena • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/49K0
22. CIP 420588 • Ipomoea batatas (L.) Lam. • Camote Rosado • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4BZ2
23. CIP 420607 • Ipomoea batatas (L.) Lam. • Trujillano • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4CJN
24. CIP 420665 • Ipomoea batatas (L.) Lam. • Trujillano • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4EC5
25. CIP 420737 • Ipomoea batatas (L.) Lam. • Amarillo Morado • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4GM3
26. CIP 420753 • Ipomoea batatas (L.) Lam. • Pierna De Viuda Morado • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4H4K
27. CIP 420845 • Ipomoea batatas (L.) Lam. • Rojo • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4M00
28. CIP 420897 • Ipomoea batatas (L.) Lam. • Corazon de Huarango • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4NMF
29. CIP 420900 • Ipomoea batatas (L.) Lam. • Cajon Blanco • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4NQJ
30. CIP 420973 • Ipomoea batatas (L.) Lam. • Morado • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4R0H
31. CIP 421117 • Ipomoea batatas (L.) Lam. • Conchucano Huarcarpon • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4WA7
32. CIP 421119 • Ipomoea batatas (L.) Lam. • Santa Elena # 1 • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/4WC9
33. CIP 422656 • Ipomoea batatas (L.) Lam. • Huambachero • Traditional cultivar/Landrace • Peru
PER001 • DOI: 10.18730/5ZEN
34. CIP 440003 • Ipomoea batatas (L.) Lam. • Sumor • Advanced/improved cultivar • United States
PER001 • DOI: 10.18730/61XT
35. CIP 440036 • Ipomoea batatas (L.) Lam. • Luby • Traditional cultivar/Landrace • Burundi
PER001 • DOI: 10.18730/P671Y
36. CIP 440038 • Ipomoea batatas (L.) Lam. • IITA TIS 2498 • Breeding/Research Material • Nigeria
PER001 • DOI: 10.18730/62VK
37. CIP 440045 • Ipomoea batatas (L.) Lam. • Toquecita • Advanced/improved cultivar • Puerto Rico
PER001 • DOI: 10.18730/632T
38. CIP 440049 • Ipomoea batatas (L.) Lam. • Mojave • Advanced/improved cultivar • Puerto Rico
PER001 • DOI: 10.18730/636Y
39. CIP 440062 • Ipomoea batatas (L.) Lam. • TIS 2534 • Breeding/Research Material • Nigeria
PER001 • DOI: 10.18730/63J5
40. CIP 440102 • Ipomoea batatas (L.) Lam. • TIS 83/0138 • Breeding/Research Material • Nigeria
PER001 • DOI: 10.18730/64T8
41. CIP 440120 • Ipomoea batatas (L.) Lam. • Minamiyutaka • Advanced/improved cultivar • Japan
PER001 • DOI: 10.18730/65CT
42. CIP 440146 • Ipomoea batatas (L.) Lam. • CMR 1592 • Traditional cultivar/Landrace • Cameroon
PER001 • DOI: 10.18730/664D
43. CIP 440158 • Ipomoea batatas (L.) Lam. • Chao Shu 1 • Breeding/Research Material • China
PER001 • DOI: 10.18730/66EQ
44. CIP 440166 • Ipomoea batatas (L.) Lam. • Tanzania • Traditional cultivar/Landrace • Uganda
PER001 • DOI: 10.18730/66NY
45. CIP 440242 • Ipomoea batatas (L.) Lam. • 85016-100 • Breeding/Research Material • Tonga
PER001 • DOI: 10.18730/68ZY
46. CIP 440267 • Ipomoea batatas (L.) Lam. • Hung Loc 4 • Traditional cultivar/Landrace • Vietnam
PER001 • DOI: 10.18730/69QH
47. CIP 440281 • Ipomoea batatas (L.) Lam. • 85016-72 • Traditional cultivar/Landrace • Tonga
PER001 • DOI: 10.18730/6A3X
48. CIP 440290 • Ipomoea batatas (L.) Lam. • Waimanalao • Traditional cultivar/Landrace • Philippines
PER001 • DOI: 10.18730/6AC1
49. CIP 440478 • Ipomoea batatas (L.) Lam. • No. Kode: 4 • Breeding/Research Material • Indonesia
PER001 • DOI: 10.18730/6FMN
50. CIP 440617 • Ipomoea batatas (L.) Lam. • Muk 192 • Traditional cultivar/Landrace • Malaysia
PER001 • DOI: 10.18730/6J0Q