Classification of SPVD Atack in 249 Sweet Potato Accessions Using Machine Learning and Multispectral and Thermal Imagery

Disclaimer: This is a subset created from an on-going evaluation experiment and needs to be treated as preliminary data subject to validation and potential change.

This dataset presents 72 accessions classified as potentially resistant to Sweet Potato Virus Disease (SPVD). The data come from a field experiment conducted at the CIP–San Ramón station (Junín, Peru), where 249 clones from the Central Collection of the CIP Sweet Potato Germplasm Bank were evaluated under two contrasting treatments: (1) the virus zone, an environment with high viral pressure, surrounded by SPVD-infected plants to promote natural infection, and (2) the control zone, a physically isolated area protected through periodic pesticide applications to reduce vector presence. To assess SPVD severity in the clones, expert evaluators conducted periodic visual assessments of symptoms, and the total yield of each clone was recorded at harvest. Based on these evaluations, a classification table with three SPVD response categories—resistant, tolerant, and susceptible—was proposed, using as indicators the yield reduction of clones grown in the virus zone compared to the control, as well as the average severity scores from visual assessments, following the methodology described in Kreuze et al. (2024). The visual SPVD severity assessments were complemented with multispectral and thermal aerial imagery captured at solar noon, when plants experience their highest stress levels. Features extracted from the optical and thermal images, together with the SPVD attack classification table described above, were used to train machine learning models to classify the three SPVD response categories.

The 72 accessions described in this dataset correspond to those classified as potentially resistant to SPVD.

The software for classifying SPVD resistance of 249 clones from CIP Germplasm Bank is available at the following dataverse link: https://doi.org/10.21223/P3/CRYBP2

Kreuze et al. (2024). High-throughput characterization and phenotyping of resistance and tolerance to virus infection in sweetpotato. Virus Research, 339, 199276. https://doi.org/10.1016/j.virusres.2023.199276

Crop
sweetpotato
Number of accessions
72
Creation date
2025
Published in Genesys
December 9, 2025
Subset metadata

Subset creators


Data manager
Heider, Bettina International Potato Center (CIP)
Data manager
Loayza, Hildo International Potato Center (CIP)

Data and resources


MCPD passport data

MCPD - e064308b-93fa-4e94-b303-f15a3020ee20.xlsx

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Accessions

List of accessions included in the subset

2. CIP 400051Ipomoea batatas (L.) Lam. • Blanca • Traditional cultivar/LandraceArgentina
PER001 • DOI: 10.18730/2D4T
3. CIP 400081Ipomoea batatas (L.) Lam. • Yety Carai • Traditional cultivar/LandraceArgentina
PER001 • DOI: 10.18730/2DYF
4. CIP 400117Ipomoea batatas (L.) Lam. • SM A 2341 San Pedro Selec • Breeding/Research MaterialArgentina
PER001 • DOI: 10.18730/2F1D
5. CIP 400146Ipomoea batatas (L.) Lam. • Huila Apichu • Traditional cultivar/LandraceBolivia
PER001 • DOI: 10.18730/2FQ=
6. CIP 400239Ipomoea batatas (L.) Lam. • unknown • Traditional cultivar/LandraceBrazil
PER001 • DOI: 10.18730/2JGD
7. CIP 400242Ipomoea batatas (L.) Lam. • Roxa-roxa • Traditional cultivar/LandraceBrazil
PER001 • DOI: 10.18730/2JJF
8. CIP 400292Ipomoea batatas (L.) Lam. • Douce Vermelia • Traditional cultivar/LandraceBrazil
PER001 • DOI: 10.18730/2M2T
9. CIP 400329Ipomoea batatas (L.) Lam. • Branca • Traditional cultivar/LandraceBrazil
PER001 • DOI: 10.18730/2N5R
10. CIP 400550Ipomoea batatas (L.) Lam. • Unknown • Traditional cultivar/LandraceCosta Rica
PER001 • DOI: 10.18730/2VE3
11. CIP 400830Ipomoea batatas (L.) Lam. • Hoja de Pancho • Traditional cultivar/LandraceDominican Republic
PER001 • DOI: 10.18730/2XT5
12. CIP 401055Ipomoea batatas (L.) Lam. • Camote Blanco • Traditional cultivar/LandraceGuatemala
PER001 • DOI: 10.18730/341K
13. CIP 401205Ipomoea batatas (L.) Lam. • Unknown • Traditional cultivar/LandraceMexico
PER001 • DOI: 10.18730/37WZ
14. CIP 401211Ipomoea batatas (L.) Lam. • Criollo de Veracruz • Traditional cultivar/LandraceMexico
PER001 • DOI: 10.18730/3820
15. CIP 401302Ipomoea batatas (L.) Lam. • Roxa • Traditional cultivar/LandraceParaguay
PER001 • DOI: 10.18730/3AM8
16. CIP 401307Ipomoea batatas (L.) Lam. • Boliviana • Traditional cultivar/LandraceParaguay
PER001 • DOI: 10.18730/3ASD
17. CIP 401316Ipomoea batatas (L.) Lam. • Yety Panambi • Traditional cultivar/LandraceParaguay
PER001 • DOI: 10.18730/3B2P
18. CIP 401491Ipomoea batatas (L.) Lam. • Traditional cultivar/LandraceMexico
PER001 • DOI: 10.18730/3EV*
19. CIP 420019Ipomoea batatas (L.) Lam. • Pedro • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/3THU
20. CIP 420255Ipomoea batatas (L.) Lam. • Dulce • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/41S9
21. CIP 420511Ipomoea batatas (L.) Lam. • Camote No Tengas Pena • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/49K0
22. CIP 420588Ipomoea batatas (L.) Lam. • Camote Rosado • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4BZ2
23. CIP 420607Ipomoea batatas (L.) Lam. • Trujillano • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4CJN
24. CIP 420665Ipomoea batatas (L.) Lam. • Trujillano • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4EC5
25. CIP 420737Ipomoea batatas (L.) Lam. • Amarillo Morado • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4GM3
26. CIP 420753Ipomoea batatas (L.) Lam. • Pierna De Viuda Morado • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4H4K
27. CIP 420845Ipomoea batatas (L.) Lam. • Rojo • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4M00
28. CIP 420897Ipomoea batatas (L.) Lam. • Corazon de Huarango • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4NMF
29. CIP 420900Ipomoea batatas (L.) Lam. • Cajon Blanco • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4NQJ
30. CIP 420973Ipomoea batatas (L.) Lam. • Morado • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4R0H
31. CIP 421117Ipomoea batatas (L.) Lam. • Conchucano Huarcarpon • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4WA7
32. CIP 421119Ipomoea batatas (L.) Lam. • Santa Elena # 1 • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/4WC9
33. CIP 422656Ipomoea batatas (L.) Lam. • Huambachero • Traditional cultivar/LandracePeru
PER001 • DOI: 10.18730/5ZEN
34. CIP 440003Ipomoea batatas (L.) Lam. • Sumor • Advanced/improved cultivarUnited States of America
PER001 • DOI: 10.18730/61XT
35. CIP 440036Ipomoea batatas (L.) Lam. • Luby • Traditional cultivar/LandraceBurundi
PER001 • DOI: 10.18730/P671Y
36. CIP 440038Ipomoea batatas (L.) Lam. • IITA TIS 2498 • Breeding/Research MaterialNigeria
PER001 • DOI: 10.18730/62VK
37. CIP 440045Ipomoea batatas (L.) Lam. • Toquecita • Advanced/improved cultivarPuerto Rico
PER001 • DOI: 10.18730/632T
38. CIP 440049Ipomoea batatas (L.) Lam. • Mojave • Advanced/improved cultivarPuerto Rico
PER001 • DOI: 10.18730/636Y
39. CIP 440062Ipomoea batatas (L.) Lam. • TIS 2534 • Breeding/Research MaterialNigeria
PER001 • DOI: 10.18730/63J5
40. CIP 440102Ipomoea batatas (L.) Lam. • TIS 83/0138 • Breeding/Research MaterialNigeria
PER001 • DOI: 10.18730/64T8
41. CIP 440120Ipomoea batatas (L.) Lam. • Minamiyutaka • Advanced/improved cultivarJapan
PER001 • DOI: 10.18730/65CT
42. CIP 440146Ipomoea batatas (L.) Lam. • CMR 1592 • Traditional cultivar/LandraceCameroon
PER001 • DOI: 10.18730/664D
43. CIP 440158Ipomoea batatas (L.) Lam. • Chao Shu 1 • Breeding/Research MaterialChina
PER001 • DOI: 10.18730/66EQ
44. CIP 440166Ipomoea batatas (L.) Lam. • Tanzania • Traditional cultivar/LandraceUganda
PER001 • DOI: 10.18730/66NY
45. CIP 440242Ipomoea batatas (L.) Lam. • 85016-100 • Breeding/Research MaterialTonga
PER001 • DOI: 10.18730/68ZY
46. CIP 440267Ipomoea batatas (L.) Lam. • Hung Loc 4 • Traditional cultivar/LandraceVietnam
PER001 • DOI: 10.18730/69QH
47. CIP 440281Ipomoea batatas (L.) Lam. • 85016-72 • Traditional cultivar/LandraceTonga
PER001 • DOI: 10.18730/6A3X
48. CIP 440290Ipomoea batatas (L.) Lam. • Waimanalao • Traditional cultivar/LandracePhilippines
PER001 • DOI: 10.18730/6AC1
49. CIP 440478Ipomoea batatas (L.) Lam. • No. Kode: 4 • Breeding/Research MaterialIndonesia
PER001 • DOI: 10.18730/6FMN
50. CIP 440617Ipomoea batatas (L.) Lam. • Muk 192 • Traditional cultivar/LandraceMalaysia
PER001 • DOI: 10.18730/6J0Q