Oryza with NAS genes for enhancing zinc concentration

NAS (Nicotianamine Synthase) genes play a vital role in enhancing the bioavailability of iron and zinc in rice grains. These genes synthesize nicotianamine, a metal chelator that facilitates zinc transport within the plant (Nishiyama et al., 2012). Overexpression of NAS genes increases zinc concentration in rice grains and improves its distribution in the endosperm, crucial for dietary zinc bioavailability (Johnson et al., 2011; Kyriacou et al., 2014). Biofortification efforts focus on this trait to address micronutrient deficiencies, or "hidden hunger." The Rice Biodiversity Center for Africa (RBCA) team conducted genotyping of 593 accessions of Oryza spp. using DArTseq-based genotyping by sequencing (GBS) technology. The results allowed them to identify a subset of 381 accessions containing NAS genes that regulate zinc concentration in rice grains. This subset includes 15 accessions of Oryza barthii, 290 of Oryza glaberrima and 76 accessions of Oryza sativa species.

Type of subset
Representative
Method of selection
Molecular
Crop
rice
Number of accessions
378
FAO WIEWS Institute
Creation date
July 22, 2024
Source
Genotyped by Intertek Lab using DArTseq SNP markers
Published in Genesys
October 21, 2024
Subset metadata

Subset creators


Data collector
Arnaud Gouda Africa Rice Center
Data manager
Clinton Ogwuike Africa Rice Center
Data curator
Marie-Noelle Ndjiondjop Africa Rice Center

Data and resources


MCPD passport data

MCPD - e13e50f0-c249-46d9-a004-62a1ae9db497.xlsx

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Accessions

List of accessions included in the subset

1. WAB0028879 • Oryza
CIV033 • DOI: N/A
2. WAB0028900 • Oryza
CIV033 • DOI: N/A
3. WAB0028935 • Oryza
CIV033 • DOI: N/A
4. WAB0028970 • Oryza
CIV033 • DOI: N/A
5. WAB0028971 • Oryza
CIV033 • DOI: N/A
6. WAB0028998 • Oryza
CIV033 • DOI: N/A
7. WAB0030120 • Oryza
CIV033 • DOI: N/A
8. WAB0037060 • Oryza
CIV033 • DOI: N/A
9. WAB0038204 • Oryza
CIV033 • DOI: N/A
11. WAB0000055 • Oryza sativa L. subsp. indica S.Kato • ITA 333 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/H86X=
12. WAB0000058 • Oryza sativa L. subsp. japonica S.Kato • WAB96-1-1 • Advanced/improved cultivar • Ivory Coast
CIV033 • DOI: 10.18730/H8701
13. WAB0000072 • Oryza sativa L. subsp. indica S.Kato • ITA 325 • Advanced/improved cultivar • Nigeria
CIV033 • DOI: 10.18730/H87AB
14. WAB0001126 • Oryza glaberrima Steud. • TOG 5284 • Traditional cultivar/Landrace • Ivory Coast
CIV033 • DOI: 10.18730/H8CM~
15. WAB0001255 • Oryza glaberrima Steud. • TOG 5552 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/H8CS1
16. WAB0001413 • Oryza glaberrima Steud. • TOG 6203 • Traditional cultivar/Landrace • Guinea
CIV033 • DOI: 10.18730/H8CZ7
17. WAB0001430 • Oryza glaberrima Steud. • TOG 6221 • Traditional cultivar/Landrace • Nigeria
CIV033 • DOI: 10.18730/H8D7F
18. WAB0001443 • Oryza glaberrima Steud. • TOG 6235 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8DBK
19. WAB0001503 • Oryza sativa L. subsp. indica S.Kato • TOG 6297 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8EVY
20. WAB0001544 • Oryza glaberrima Steud. • TOG 6339 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8FYW
21. WAB0001547 • Oryza glaberrima Steud. • TOG 6342 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8G1Z
22. WAB0001551 • Oryza glaberrima Steud. • TOG 6346 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8G5=
23. WAB0001553 • Oryza glaberrima Steud. • TOG 6349 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8G70
24. WAB0001563 • Oryza glaberrima Steud. • TOG 6359 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8GE7
25. WAB0001642 • Oryza glaberrima Steud. • TOG 6441 • Traditional cultivar/Landrace • Mali
CIV033 • DOI: 10.18730/H8JM3
26. WAB0001647 • Oryza glaberrima Steud. • TOG 6449 • Traditional cultivar/Landrace • Mali
CIV033 • DOI: 10.18730/H8JP5
27. WAB0001664 • Oryza glaberrima Steud. • TOG 6472 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8K4K
28. WAB0001681 • Oryza glaberrima Steud. • TOG 6489 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8KK$
29. WAB0001689 • Oryza glaberrima Steud. • TOG 6497 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8KV5
30. WAB0001698 • Oryza glaberrima Steud. • TOG 6506 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8M2C
31. WAB0001712 • Oryza glaberrima Steud. • TOG 6520 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8MCP
32. WAB0001734 • Oryza glaberrima Steud. • TOG 6542 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/SE9RG
33. WAB0001748 • Oryza glaberrima Steud. • TOG 6556 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8N8D
34. WAB0001749 • Oryza glaberrima Steud. • TOG 6557 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8N9E
35. WAB0001765 • Oryza glaberrima Steud. • TOG 6573 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8NNT
36. WAB0001781 • Oryza glaberrima Steud. • TOG 6589 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8P00
37. WAB0001819 • Oryza glaberrima Steud. • TOG 6629 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8PYY
38. WAB0001836 • Oryza glaberrima Steud. • TOG 6646 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8QD8
39. WAB0001873 • Oryza glaberrima Steud. • TOG 6683 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8RA0
40. WAB0001900 • Oryza glaberrima Steud. • TOG 6710 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8RSF
41. WAB0001913 • Oryza glaberrima Steud. • TOG 6723 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8S3S
42. WAB0001921 • Oryza glaberrima Steud. • TOG 6731 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8S8Y
43. WAB0001931 • Oryza glaberrima Steud. • TOG 6741 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8SG1
44. WAB0001945 • Oryza glaberrima Steud. • TOG 6755 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8SQ8
45. WAB0001953 • Oryza glaberrima Steud. • TOG 6763 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8SYF
46. WAB0001954 • Oryza glaberrima Steud. • TOG 6764 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8SZG
47. WAB0001959 • Oryza glaberrima Steud. • TOG 6769 • Traditional cultivar/Landrace • Liberia
CIV033 • DOI: 10.18730/H8T2K
48. WAB0002011 • Oryza glaberrima Steud. • TOG 7020 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/H8TM0
49. WAB0002016 • Oryza glaberrima Steud. • TOG 7043 • Traditional cultivar/Landrace • Sierra Leone
CIV033 • DOI: 10.18730/H8TQ3
50. WAB0002020 • Oryza glaberrima Steud. • LG 4 • Traditional cultivar/Landrace • Mali
CIV033 • DOI: 10.18730/H8TS5