Oryza with NAS genes for enhancing zinc concentration

NAS (Nicotianamine Synthase) genes play a vital role in enhancing the bioavailability of iron and zinc in rice grains. These genes synthesize nicotianamine, a metal chelator that facilitates zinc transport within the plant (Nishiyama et al., 2012). Overexpression of NAS genes increases zinc concentration in rice grains and improves its distribution in the endosperm, crucial for dietary zinc bioavailability (Johnson et al., 2011; Kyriacou et al., 2014). Biofortification efforts focus on this trait to address micronutrient deficiencies, or "hidden hunger." The Rice Biodiversity Center for Africa (RBCA) team conducted genotyping of 593 accessions of Oryza spp. using DArTseq-based genotyping by sequencing (GBS) technology. The results allowed them to identify a subset of 381 accessions containing NAS genes that regulate zinc concentration in rice grains. This subset includes 15 accessions of Oryza barthii, 290 of Oryza glaberrima and 76 accessions of Oryza sativa species.

Type of subset
Representative
Method of selection
Molecular
Crop
rice
Number of accessions
378
FAO WIEWS Institute
Creation date
July 22 2024
Source
Genotyped by Intertek Lab using DArTseq SNP markers
Published in Genesys
21 October 2024
Subset metadata

Subset creators


Data collector
Arnaud Gouda Africa Rice Center
Data manager
Clinton Ogwuike Africa Rice Center
Data curator
Marie-Noelle Ndjiondjop Africa Rice Center

Data and resources


MCPD passport data

MCPD - e13e50f0-c249-46d9-a004-62a1ae9db497.xlsx

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Accessions

List of accessions included in the subset

1. WAB0028879Oryza
CIV033 • DOI: N/A
2. WAB0028900Oryza
CIV033 • DOI: N/A
3. WAB0028935Oryza
CIV033 • DOI: N/A
4. WAB0028970Oryza
CIV033 • DOI: N/A
5. WAB0028971Oryza
CIV033 • DOI: N/A
6. WAB0028998Oryza
CIV033 • DOI: N/A
7. WAB0030120Oryza
CIV033 • DOI: N/A
8. WAB0037060Oryza
CIV033 • DOI: N/A
9. WAB0038204Oryza
CIV033 • DOI: N/A
11. WAB0000055Oryza sativa L. subsp. indica S.Kato • ITA 333 • Advanced/improved cultivar • NGA
CIV033 • DOI: 10.18730/H86X=
12. WAB0000058Oryza sativa L. subsp. japonica S.Kato • WAB96-1-1 • Advanced/improved cultivar • CIV
CIV033 • DOI: 10.18730/H8701
13. WAB0000072Oryza sativa L. subsp. indica S.Kato • ITA 325 • Advanced/improved cultivar • NGA
CIV033 • DOI: 10.18730/H87AB
14. WAB0001126Oryza glaberrima Steud. • TOG 5284 • Traditional cultivar/Landrace • CIV
CIV033 • DOI: 10.18730/H8CM~
15. WAB0001255Oryza glaberrima Steud. • TOG 5552 • Traditional cultivar/Landrace • NGA
CIV033 • DOI: 10.18730/H8CS1
16. WAB0001413Oryza glaberrima Steud. • TOG 6203 • Traditional cultivar/Landrace • GIN
CIV033 • DOI: 10.18730/H8CZ7
17. WAB0001430Oryza glaberrima Steud. • TOG 6221 • Traditional cultivar/Landrace • NGA
CIV033 • DOI: 10.18730/H8D7F
18. WAB0001443Oryza glaberrima Steud. • TOG 6235 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8DBK
19. WAB0001503Oryza sativa L. subsp. indica S.Kato • TOG 6297 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8EVY
20. WAB0001544Oryza glaberrima Steud. • TOG 6339 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8FYW
21. WAB0001547Oryza glaberrima Steud. • TOG 6342 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8G1Z
22. WAB0001551Oryza glaberrima Steud. • TOG 6346 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8G5=
23. WAB0001553Oryza glaberrima Steud. • TOG 6349 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8G70
24. WAB0001563Oryza glaberrima Steud. • TOG 6359 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8GE7
25. WAB0001642Oryza glaberrima Steud. • TOG 6441 • Traditional cultivar/Landrace • MLI
CIV033 • DOI: 10.18730/H8JM3
26. WAB0001647Oryza glaberrima Steud. • TOG 6449 • Traditional cultivar/Landrace • MLI
CIV033 • DOI: 10.18730/H8JP5
27. WAB0001664Oryza glaberrima Steud. • TOG 6472 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8K4K
28. WAB0001681Oryza glaberrima Steud. • TOG 6489 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8KK$
29. WAB0001689Oryza glaberrima Steud. • TOG 6497 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8KV5
30. WAB0001698Oryza glaberrima Steud. • TOG 6506 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8M2C
31. WAB0001712Oryza glaberrima Steud. • TOG 6520 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8MCP
32. WAB0001734Oryza glaberrima Steud. • TOG 6542 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/SE9RG
33. WAB0001748Oryza glaberrima Steud. • TOG 6556 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8N8D
34. WAB0001749Oryza glaberrima Steud. • TOG 6557 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8N9E
35. WAB0001765Oryza glaberrima Steud. • TOG 6573 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8NNT
36. WAB0001781Oryza glaberrima Steud. • TOG 6589 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8P00
37. WAB0001819Oryza glaberrima Steud. • TOG 6629 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8PYY
38. WAB0001836Oryza glaberrima Steud. • TOG 6646 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8QD8
39. WAB0001873Oryza glaberrima Steud. • TOG 6683 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8RA0
40. WAB0001900Oryza glaberrima Steud. • TOG 6710 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8RSF
41. WAB0001913Oryza glaberrima Steud. • TOG 6723 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8S3S
42. WAB0001921Oryza glaberrima Steud. • TOG 6731 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8S8Y
43. WAB0001931Oryza glaberrima Steud. • TOG 6741 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8SG1
44. WAB0001945Oryza glaberrima Steud. • TOG 6755 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8SQ8
45. WAB0001953Oryza glaberrima Steud. • TOG 6763 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8SYF
46. WAB0001954Oryza glaberrima Steud. • TOG 6764 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8SZG
47. WAB0001959Oryza glaberrima Steud. • TOG 6769 • Traditional cultivar/Landrace • LBR
CIV033 • DOI: 10.18730/H8T2K
48. WAB0002011Oryza glaberrima Steud. • TOG 7020 • Traditional cultivar/Landrace • SLE
CIV033 • DOI: 10.18730/H8TM0
49. WAB0002016Oryza glaberrima Steud. • TOG 7043 • Traditional cultivar/Landrace • SLE
CIV033 • DOI: 10.18730/H8TQ3
50. WAB0002020Oryza glaberrima Steud. • LG 4 • Traditional cultivar/Landrace • MLI
CIV033 • DOI: 10.18730/H8TS5