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Oryza glaberrima mini-core collection

The mini-core collection of Oryza glaberrima accounts for ~16% of O. glaberrima germplasm conserved at the AfricaRice genebank. We characterized the genetic variation and population structure using DArTseq. Overall, O. glaberrima showed very low genetic variation, but clear population structure, primarily by countries of origin, and less so by ecology.

It represents all countries and ecologies of origin, and all groups predicted based on both cluster and population STRUCTURE analyses, proportionally to the size of each cluster.

The mini-core collection may be highly valuable for various purposes, including allele mining and donor parent selection for developing new improved rice germplasm for target traits of interest.

Crop

rice

Number of accessions

350

FAO WIEWS Institute

Africa Rice Center

Creation date

October 17, 2017

Source

https://www.frontiersin.org/articles/10.3389/fpls.2017.01748/full

Published in Genesys

June 27, 2019

Subset metadata

Subset creators

Data curator

Marie-Noelle Ndjiondjop Africa Rice Center

Data collector

Sèdjro B. Kpeki Africa Rice Center

Data and resources

MCPD passport data

MCPD - edb035ac-9e4c-4c99-80e9-8c6a9ec4d4e2.xlsx

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Accessions

List of accessions included in the subset

1. WABTMP13 • Oryza

CIV033 • DOI: N/A

2. WABTMP23 • Oryza

CIV033 • DOI: N/A

3. WABTMP3 • Oryza

CIV033 • DOI: N/A

4. WABTMP5 • Oryza

CIV033 • DOI: N/A

5. WABTMP9 • Oryza

CIV033 • DOI: N/A

6. WAB0001255 • Oryza glaberrima Steud. • TOG 5552 • Traditional cultivar/Landrace • Nigeria

CIV033 • DOI: 10.18730/H8CS1

7. WAB0001316 • Oryza glaberrima Steud. • TOG 5795 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/HQGMJ

8. WAB0001407 • Oryza glaberrima Steud. • TOG 6196 • Traditional cultivar/Landrace • Guinea

CIV033 • DOI: 10.18730/H8CT2

9. WAB0001412 • Oryza glaberrima Steud. • TOG 6202 • Traditional cultivar/Landrace • Guinea

CIV033 • DOI: 10.18730/H8CY6

10. WAB0001417 • Oryza glaberrima Steud. • TOG 6207 • Traditional cultivar/Landrace • Ivory Coast

CIV033 • DOI: 10.18730/H8D2A

11. WAB0001421 • Oryza glaberrima Steud. • TOG 6211 • Traditional cultivar/Landrace • Nigeria

CIV033 • DOI: 10.18730/H8D4C

12. WAB0001422 • Oryza glaberrima Steud. • TOG 6212 • Traditional cultivar/Landrace • Sierra Leone

CIV033 • DOI: 10.18730/H8D5D

13. WAB0001449 • Oryza glaberrima Steud. • TOG 6242 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8DGR

14. WAB0001459 • Oryza glaberrima Steud. • TOG 6252 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8DR*

15. WAB0001474 • Oryza glaberrima Steud. • TOG 6267 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8E36

16. WAB0001482 • Oryza glaberrima Steud. • TOG 6275 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8EAD

17. WAB0001491 • Oryza glaberrima Steud. • TOG 6285 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8EGK

18. WAB0001526 • Oryza glaberrima Steud. • TOG 6321 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8FCA

19. WAB0001589 • Oryza glaberrima Steud. • TOG 6387 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8H3W

20. WAB0001613 • Oryza glaberrima Steud. • TOG 6411 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8HQB

21. WAB0001628 • Oryza glaberrima Steud. • TOG 6427 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8J6T

22. WAB0001647 • Oryza glaberrima Steud. • TOG 6449 • Traditional cultivar/Landrace • Mali

CIV033 • DOI: 10.18730/H8JP5

23. WAB0001652 • Oryza glaberrima Steud. • TOG 6460 • Traditional cultivar/Landrace • Mali

CIV033 • DOI: 10.18730/H8JS8

24. WAB0001660 • Oryza glaberrima Steud. • TOG 6468 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8K0F

25. WAB0001713 • Oryza glaberrima Steud. • TOG 6521 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8MDQ

26. WAB0001738 • Oryza glaberrima Steud. • TOG 6546 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8N05

27. WAB0001748 • Oryza glaberrima Steud. • TOG 6556 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8N8D

28. WAB0001749 • Oryza glaberrima Steud. • TOG 6557 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8N9E

29. WAB0001750 • Oryza glaberrima Steud. • TOG 6558 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8NAF

30. WAB0001763 • Oryza glaberrima Steud. • TOG 6767 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/SE68F

31. WAB0001765 • Oryza glaberrima Steud. • TOG 6573 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8NNT

32. WAB0001825 • Oryza glaberrima Steud. • TOG 6635 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8Q3=

33. WAB0001923 • Oryza glaberrima Steud. • TOG 6733 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8SA*

34. WAB0001954 • Oryza glaberrima Steud. • TOG 6764 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8SZG

35. WAB0001959 • Oryza glaberrima Steud. • TOG 6769 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8T2K

36. WAB0001999 • Oryza glaberrima Steud. • TOG 6891 • Traditional cultivar/Landrace • Liberia

CIV033 • DOI: 10.18730/H8TJ=

37. WAB0002016 • Oryza glaberrima Steud. • TOG 7043 • Traditional cultivar/Landrace • Sierra Leone

CIV033 • DOI: 10.18730/H8TQ3

38. WAB0002044 • Oryza glaberrima Steud. • TOG 7131 • Traditional cultivar/Landrace • Senegal

CIV033 • DOI: 10.18730/H8V9N

39. WAB0002048 • Oryza glaberrima Steud. • TOG 7135 • Traditional cultivar/Landrace • Senegal

CIV033 • DOI: 10.18730/H8VBQ

40. WAB0002049 • Oryza glaberrima Steud. • TOG 7136 • Traditional cultivar/Landrace • Senegal

CIV033 • DOI: 10.18730/H8VCR

41. WAB0002055 • Oryza glaberrima Steud. • TOG 7143 • Traditional cultivar/Landrace • Senegal

CIV033 • DOI: 10.18730/SE63A

42. WAB0002070 • Oryza glaberrima Steud. • TOG 7157 • Traditional cultivar/Landrace • Senegal

CIV033 • DOI: 10.18730/H8VX4

43. WAB0002073 • Oryza glaberrima Steud. • TOG 7160 • Traditional cultivar/Landrace • Senegal

CIV033 • DOI: 10.18730/SE0QQ

44. WAB0002083 • Oryza glaberrima Steud. • TOG 7171 • Traditional cultivar/Landrace • Senegal

CIV033 • DOI: 10.18730/SE0HH

45. WAB0002095 • Oryza glaberrima Steud. • TOG 7188 • Traditional cultivar/Landrace • Mali

CIV033 • DOI: 10.18730/SE0EE

46. WAB0002104 • Oryza glaberrima Steud. • TOG 7200 • Traditional cultivar/Landrace • Ivory Coast

CIV033 • DOI: 10.18730/H8WHR

47. WAB0002105 • Oryza glaberrima Steud. • TOG 7201 • Traditional cultivar/Landrace • Ivory Coast

CIV033 • DOI: 10.18730/H8WJS

48. WAB0002107 • Oryza glaberrima Steud. • TOG 7203 • Traditional cultivar/Landrace • Ivory Coast

CIV033 • DOI: 10.18730/H8WMV

49. WAB0002109 • Oryza glaberrima Steud. • TOG 7205 • Traditional cultivar/Landrace • Ivory Coast

CIV033 • DOI: 10.18730/H8WPX

50. WAB0002119 • Oryza glaberrima Steud. • TOG 7215 • Traditional cultivar/Landrace • Mali

CIV033 • DOI: 10.18730/H8WY0