Oryza glaberrima mini-core collection

The mini-core collection of Oryza glaberrima accounts for ~16% of O. glaberrima germplasm conserved at the AfricaRice genebank. We characterized the genetic variation and population structure using DArTseq. Overall, O. glaberrima showed very low genetic variation, but clear population structure, primarily by countries of origin, and less so by ecology.

It represents all countries and ecologies of origin, and all groups predicted based on both cluster and population STRUCTURE analyses, proportionally to the size of each cluster.

The mini-core collection may be highly valuable for various purposes, including allele mining and donor parent selection for developing new improved rice germplasm for target traits of interest.

Crop
Rice
Number of accessions
350
Creation date
17 October 2017
Subset metadata

Subset creators


Data curator
Marie-Noelle Ndjiondjop Africa Rice Center
Data collector
Sèdjro B. Kpeki Africa Rice Center

Data and resources


MCPD passport data

MCPD - edb035ac-9e4c-4c99-80e9-8c6a9ec4d4e2.xlsx

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Accessions

List of accessions included in the subset

1. WABTMP13Oryza
CIV033 DOI: N/A
2. WABTMP23Oryza
CIV033 DOI: N/A
3. WABTMP3Oryza
CIV033 DOI: N/A
4. WABTMP5Oryza
CIV033 DOI: N/A
5. WABTMP9Oryza
CIV033 DOI: N/A
6. WAB0001255Oryza glaberrima Steud. • TOG 5552 • Traditional cultivar/Landrace • Nigeria+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8CS1
7. WAB0001316Oryza glaberrima Steud. • TOG 5795 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/HQGMJ
8. WAB0001407Oryza glaberrima Steud. • TOG 6196 • Traditional cultivar/Landrace • Guinea+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8CT2
9. WAB0001412Oryza glaberrima Steud. • TOG 6202 • Traditional cultivar/Landrace • Guinea+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8CY6
10. WAB0001417Oryza glaberrima Steud. • TOG 6207 • Traditional cultivar/Landrace • Ivory Coast+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8D2A
11. WAB0001421Oryza glaberrima Steud. • TOG 6211 • Traditional cultivar/Landrace • Nigeria+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8D4C
12. WAB0001422Oryza glaberrima Steud. • TOG 6212 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8D5D
13. WAB0001449Oryza glaberrima Steud. • TOG 6242 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8DGR
14. WAB0001459Oryza glaberrima Steud. • TOG 6252 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8DR*
15. WAB0001474Oryza glaberrima Steud. • TOG 6267 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8E36
16. WAB0001482Oryza glaberrima Steud. • TOG 6275 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8EAD
17. WAB0001491Oryza glaberrima Steud. • TOG 6285 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8EGK
18. WAB0001526Oryza glaberrima Steud. • TOG 6321 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8FCA
19. WAB0001589Oryza glaberrima Steud. • TOG 6387 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8H3W
20. WAB0001613Oryza glaberrima Steud. • TOG 6411 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8HQB
21. WAB0001628Oryza glaberrima Steud. • TOG 6427 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8J6T
22. WAB0001647Oryza glaberrima Steud. • TOG 6449 • Traditional cultivar/Landrace • Mali+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8JP5
23. WAB0001652Oryza glaberrima Steud. • TOG 6460 • Traditional cultivar/Landrace • Mali+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8JS8
24. WAB0001660Oryza glaberrima Steud. • TOG 6468 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8K0F
25. WAB0001713Oryza glaberrima Steud. • TOG 6521 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8MDQ
26. WAB0001738Oryza glaberrima Steud. • TOG 6546 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8N05
27. WAB0001748Oryza glaberrima Steud. • TOG 6556 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8N8D
28. WAB0001749Oryza glaberrima Steud. • TOG 6557 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8N9E
29. WAB0001750Oryza glaberrima Steud. • TOG 6558 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8NAF
30. WAB0001763Oryza glaberrima Steud. • TOG 6767 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/SE68F
31. WAB0001765Oryza glaberrima Steud. • TOG 6573 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8NNT
32. WAB0001825Oryza glaberrima Steud. • TOG 6635 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8Q3=
33. WAB0001923Oryza glaberrima Steud. • TOG 6733 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8SA*
34. WAB0001954Oryza glaberrima Steud. • TOG 6764 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8SZG
35. WAB0001959Oryza glaberrima Steud. • TOG 6769 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8T2K
36. WAB0001999Oryza glaberrima Steud. • TOG 6891 • Traditional cultivar/Landrace • Liberia+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8TJ=
37. WAB0002016Oryza glaberrima Steud. • TOG 7043 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8TQ3
38. WAB0002044Oryza glaberrima Steud. • TOG 7131 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8V9N
39. WAB0002048Oryza glaberrima Steud. • TOG 7135 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8VBQ
40. WAB0002049Oryza glaberrima Steud. • TOG 7136 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8VCR
41. WAB0002055Oryza glaberrima Steud. • TOG 7143 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/SE63A
42. WAB0002070Oryza glaberrima Steud. • TOG 7157 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8VX4
43. WAB0002073Oryza glaberrima Steud. • TOG 7160 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/SE0QQ
44. WAB0002083Oryza glaberrima Steud. • TOG 7171 • Traditional cultivar/Landrace • Senegal+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/SE0HH
45. WAB0002095Oryza glaberrima Steud. • TOG 7188 • Traditional cultivar/Landrace • Mali+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/SE0EE
46. WAB0002104Oryza glaberrima Steud. • TOG 7200 • Traditional cultivar/Landrace • Ivory Coast+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8WHR
47. WAB0002105Oryza glaberrima Steud. • TOG 7201 • Traditional cultivar/Landrace • Ivory Coast+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8WJS
48. WAB0002107Oryza glaberrima Steud. • TOG 7203 • Traditional cultivar/Landrace • Ivory Coast+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8WMV
49. WAB0002109Oryza glaberrima Steud. • TOG 7205 • Traditional cultivar/Landrace • Ivory Coast+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8WPX
50. WAB0002119Oryza glaberrima Steud. • TOG 7215 • Traditional cultivar/Landrace • Mali+ Add to my list
CIV033Africa Rice Center, Ivory Coast • DOI: 10.18730/H8WY0