Subconjunto

3K Rice Genomes Project

These accessions were used in 'The 3000 rice genomes project'. From this international resequencing effort, approximately 18.9 million single nucleotide polymorphisms (SNPs) in rice were discovered when aligned to the reference genome of the temperate japonica variety, Nipponbare. Phylogenetic analyses based on SNP data confirmed differentiation of the O. sativa gene pool into 5 varietal groups – indica, aus/boro, basmati/sadri, tropical japonica and temperate japonica. This data serves as a foundation for large-scale discovery of novel alleles for important rice phenotypes using various bioinformatics and/or genetic approaches. It also serves to understand the genomic diversity within O. sativa at a higher level of detail. With the release of the sequencing data, the project calls for the global rice community to take advantage of this data as a foundation for establishing a global, public rice genetic/genomic database and information platform for advancing rice breeding technology for future rice improvement.

The study was done by the 3000 Rice Genomes Project (2014) with detailed analyses published by Wang et al. (2018), 10.1186/2047-217X-3-7.

Cultivos
Rice
Número de accesiones
2703
Fecha de creación
2009

Metadatos del subconjunto


Creadores del subconjunto


Curador de datos
Kenneth McNally International Rice Research Institute

Datos y recursos


Datos de pasaporte del descriptor del pasaporte de multicultivo

MCPD - 27f41bd8-c98b-401c-b689-de1a411f1410.xlsx

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Accesiones

Lista de accesiones incluidas en el subconjunto

1. IRGC 117423Oryza sativa Linnaeus • :IRGC 43322-1 • Material genético • Indonesia+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN6M
2. IRGC 117425Oryza sativa Linnaeus • ARC 10497::IRGC 12485-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN8P
3. IRGC 117426Oryza sativa Linnaeus • ARC 13829::IRGC 42469-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN9Q
4. IRGC 117430Oryza sativa Linnaeus • :IRGC 11000-1 • Material genético • Madagascar+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNDV
5. IRGC 117442Oryza sativa Linnaeus • :IRGC 32575-1 • Material genético • Filipinas+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNS2
6. IRGC 117446Oryza sativa Linnaeus • CHHOTE DHAN::IRGC 58930-1 • Material genético • Nepal+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNX6
7. IRGC 117454Oryza sativa Linnaeus • CO 39::IRGC 51231-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP5E
8. IRGC 117466Oryza sativa Linnaeus • DOM ZARD::IRGC 12881-1 • Material genético • Irán (República Islámica)+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPHT
9. IRGC 117474Oryza sativa Linnaeus • :IRGC 32301-1 • Material genético • Irán (República Islámica)+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPS$
10. IRGC 117494Oryza sativa Linnaeus • JC 1::IRGC 9091-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQDH
11. IRGC 117497Oryza sativa Linnaeus • JC 149::IRGC 9070-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQGM
12. IRGC 117498Oryza sativa Linnaeus • JC 157::IRGC 9074-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQHN
13. IRGC 117518Oryza sativa Linnaeus • KOTOBUKI MOCHI::IRGC 2545-1 • Material genético • Japón+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CR54
14. IRGC 117535Oryza sativa Linnaeus • :IRGC 8269-1 • Material genético • Taiwán+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CRPN
15. IRGC 117536Oryza sativa Linnaeus • NAM SA GUI 19::IRGC 11462-1 • Material genético • Tailandia+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CRQP
16. IRGC 117537Oryza sativa Linnaeus • NEP HOA VANG::IRGC 40748-2 • Material genético • Vietnam+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CRRQ
17. IRGC 117543Oryza sativa Linnaeus • OS 4::IRGC 11335-1 • Material genético • Nigeria+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CRYX
18. IRGC 117550Oryza sativa Linnaeus • :IRGC 8267-1 • Material genético • Taiwán+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CS5U
19. IRGC 117551Oryza sativa Linnaeus • PANKHARI 203::IRGC 5999-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CS60
20. IRGC 117569Oryza sativa Linnaeus • RIKUTO KEMOCHI::IRGC 2719-1 • Material genético • Japón+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CSRJ
21. IRGC 117593Oryza sativa Linnaeus • YANGKUM (RED)::IRGC 32406-1 • Material genético • Bután+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CTG5
22. IRGC 117597Oryza sativa Linnaeus • IR 62266-42-6-2::IRGC 117397-1 • Material genético • Filipinas+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CTM9
23. IRGC 120876Oryza sativa Linnaeus • AUS 439::IRGC 29221-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CVH1
24. IRGC 120887Oryza sativa Linnaeus • :IRGC 25838-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CVWC
25. IRGC 120894Oryza sativa Linnaeus • BHADOIA 303::IRGC 6588-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CW3K
26. IRGC 120902Oryza sativa Linnaeus • BPI 76 NON SENSITIVE (GREEN)::IRGC 9790-1 • Material genético • Filipinas+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CWBV
27. IRGC 120914Oryza sativa Linnaeus • CHUA DAU::IRGC 4785-1 • Material genético • República Popular China+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CWQ2
28. IRGC 120915Oryza sativa Linnaeus • CHUNGUR BALI::IRGC 25855-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CWR3
29. IRGC 120921Oryza sativa Linnaeus • CSR-90 IR-2::IRGC 117327-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CWY9
30. IRGC 120922Oryza sativa Linnaeus • CT 9737-6-1-1-2-2P-M::IRGC 117330-1 • Material genético • Colombia+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CWZA
31. IRGC 120927Oryza sativa Linnaeus • :IRGC 76296-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CX4F
32. IRGC 120968Oryza sativa Linnaeus • :IRGC 67631-1 • Material genético • Sri Lanka+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CYDK
33. IRGC 120969Oryza sativa Linnaeus • HOLOI BASH (SOLOI BASH)::IRGC 64778-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CYEM
34. IRGC 120991Oryza sativa Linnaeus • IRGA 318-11-6-9-2B::IRGC 117339-1 • Material genético • Colombia+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CZ45
35. IRGC 120992Oryza sativa Linnaeus • IRGA 346-111-2-1F::IRGC 117341-1 • Material genético • Colombia+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CZ56
36. IRGC 120993Oryza sativa Linnaeus • IRGA 659-1-2-2-2::IRGC 117345-1 • Material genético • Colombia+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CZ67
37. IRGC 120996Oryza sativa Linnaeus • :IRGC 73101-1 • Material genético • Pakistán+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CZ9A
38. IRGC 121003Oryza sativa Linnaeus • K 479-2-3::IRGC 117346-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CZGH
39. IRGC 121005Oryza sativa Linnaeus • :IRGC 34699-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CZJK
40. IRGC 121022Oryza sativa Linnaeus • KHARSU 80::IRGC 28016-1 • Material genético • Pakistán+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D03U
41. IRGC 121026Oryza sativa Linnaeus • :IRGC 77267-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D073
42. IRGC 121029Oryza sativa Linnaeus • KURULU WEE (WHITE)::IRGC 66518-1 • Material genético • Sri Lanka+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D0A6
43. IRGC 121036Oryza sativa Linnaeus • :IRGC 43915-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D0HD
44. IRGC 121038Oryza sativa Linnaeus • LENJA MURALI::IRGC 66815-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D0KF
45. IRGC 121069Oryza sativa Linnaeus • :IRGC 31611-1 • Material genético • Bangladesh+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D1J9
46. IRGC 121075Oryza sativa Linnaeus • NS 252::IRGC 68878-1 • Material genético • Madagascar+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D1RF
47. IRGC 121103Oryza sativa Linnaeus • RR 272-17-829::IRGC 117354-1 • Material genético • Indonesia+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D2M6
48. IRGC 121119Oryza sativa Linnaeus • :IRGC 117029-1 • Material genético • Perú+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D34P
49. IRGC 121120Oryza sativa Linnaeus • SIMUL KHURI::IRGC 35154-1 • Material genético • India+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D35Q
50. IRGC 121128Oryza sativa Linnaeus • SUFAID 246::IRGC 28303-1 • Material genético • Pakistán+ Agregar a mi lista
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5D3DZ