Subset

20 OryzaSNP

These 20 diverse varieties and landraces were used for SNP discovery by tiling arrays. Resequencing microarrays were used to interrogate 100 Mb of the unique fraction of the reference genome that captured the impressive genotypic and phenotypic diversity of domesticated rice. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement.

The study was done by Dr. Kenneth L. McNally, et al. in 2009 in https://www.pnas.org/content/early/2009/07/10/0900992106

Crop
Rice
Number of accessions
20
Creation date
2009

Subset metadata


Subset creators


Data curator
Kenneth McNally International Rice Research Institute

Data and resources


MCPD passport data

MCPD - 0b2a6451-05a9-4a8c-8531-20cd8cb52cd0.xlsx

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Accessions

List of accessions included in the subset

1. IRGC 117264Oryza sativa Linnaeus • AZUCENA • Genetic stock • Philippines+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZFQ
2. IRGC 117265Oryza sativa Linnaeus • DOM SUFID • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/1PG6J
3. IRGC 117266Oryza sativa Linnaeus • DULAR • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZGR
4. IRGC 117267Oryza sativa Linnaeus • FR 13 A • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZHS
5. IRGC 117268Oryza sativa Linnaeus • IR 64-21 • Genetic stock • Philippines+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZJT
6. IRGC 117269Oryza sativa Linnaeus • LI-JIANG-XIN-TUAN-HEI-GU • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZKV
7. IRGC 117270Oryza sativa Linnaeus • M 202 • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZMW
8. IRGC 117271Oryza sativa Linnaeus • MINGHUI 63 • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZNX
9. IRGC 117272Oryza sativa Linnaeus • MOROBEREKAN • Genetic stock • Guinea+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZPY
10. IRGC 117273Oryza sativa Linnaeus • N 22 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZQZ
11. IRGC 117274Oryza sativa Linnaeus • NIPPONBARE • Genetic stock • Japan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZR*
12. IRGC 117275Oryza sativa Linnaeus • POKKALI • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZS~
13. IRGC 117276Oryza sativa Linnaeus • SADU CHO • Genetic stock • Republic of Korea+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZT$
14. IRGC 117277Oryza sativa Linnaeus • SANHUANGZHAN NO 2 • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZV=
15. IRGC 117278Oryza sativa Linnaeus • SWARNA • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZWU
16. IRGC 117279Oryza sativa Linnaeus • TAINUNG 67 • Genetic stock • Taiwan ROC+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZX0
17. IRGC 117280Oryza sativa Linnaeus • ZHENSHAN 97 B • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZY1
18. IRGC 117281Oryza sativa Linnaeus • ASWINA • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CMYC
19. IRGC 117282Oryza sativa Linnaeus • CYPRESS • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CMZD
20. IRGC 117283Oryza sativa Linnaeus • RAYADA • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN0E