20 OryzaSNP

These 20 diverse varieties and landraces were used for SNP discovery by tiling arrays. Resequencing microarrays were used to interrogate 100 Mb of the unique fraction of the reference genome that captured the impressive genotypic and phenotypic diversity of domesticated rice. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement.

The study was done by Dr. Kenneth L. McNally, et al. in 2009 in https://www.pnas.org/content/early/2009/07/10/0900992106

Crop
rice
Number of accessions
20
Creation date
2008
Published in Genesys
9 December 2019
Subset metadata

Subset creators


Data curator
Kenneth McNally International Rice Research Institute

Data and resources


MCPD passport data

MCPD - 0b2a6451-05a9-4a8c-8531-20cd8cb52cd0.xlsx

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Accessions

List of accessions included in the subset

2. IRGC 117265Oryza sativa Linnaeus Aromatic • DOM SUFID • Genetic stock • IRN
PHL001 • DOI: 10.18730/1PG6J
3. IRGC 117266Oryza sativa Linnaeus Aus • DULAR • Genetic stock • IND
PHL001 • DOI: 10.18730/4WZGR
4. IRGC 117267Oryza sativa Linnaeus Aus • FR 13 A • Genetic stock • IND
PHL001 • DOI: 10.18730/4WZHS
5. IRGC 117268Oryza sativa Linnaeus Indica • IR 64-21 • Genetic stock • XAM
PHL001 • DOI: 10.18730/4WZJT
6. IRGC 117269Oryza sativa Linnaeus Temperate japonica • LI-JIANG-XIN-TUAN-HEI-GU • Genetic stock • CHN
PHL001 • DOI: 10.18730/4WZKV
7. IRGC 117270Oryza sativa Linnaeus Tropical japonica • M 202 • Genetic stock • USA
PHL001 • DOI: 10.18730/4WZMW
8. IRGC 117271Oryza sativa Linnaeus Indica • MINGHUI 63 • Genetic stock • CHN
PHL001 • DOI: 10.18730/4WZNX
9. IRGC 117272Oryza sativa Linnaeus Tropical japonica • MOROBEREKAN • Genetic stock • GIN
PHL001 • DOI: 10.18730/4WZPY
10. IRGC 117273Oryza sativa Linnaeus Aus • N 22 • Genetic stock • IND
PHL001 • DOI: 10.18730/4WZQZ
11. IRGC 117274Oryza sativa Linnaeus Temperate japonica • NIPPONBARE • Genetic stock • JPN
PHL001 • DOI: 10.18730/4WZR*
12. IRGC 117275Oryza sativa Linnaeus Indica • POKKALI • Genetic stock • IND
PHL001 • DOI: 10.18730/4WZS~
13. IRGC 117276Oryza sativa Linnaeus Indica • SADU CHO • Genetic stock • KOR
PHL001 • DOI: 10.18730/4WZT$
14. IRGC 117277Oryza sativa Linnaeus Indica • SANHUANGZHAN NO 2 • Genetic stock • CHN
PHL001 • DOI: 10.18730/4WZV=
15. IRGC 117278Oryza sativa Linnaeus Indica • SWARNA • Genetic stock • IND
PHL001 • DOI: 10.18730/4WZWU
16. IRGC 117279Oryza sativa Linnaeus Temperate japonica • TAINUNG 67 • Genetic stock • TWN
PHL001 • DOI: 10.18730/4WZX0
17. IRGC 117280Oryza sativa Linnaeus Indica • ZHENSHAN 97 B • Genetic stock • CHN
PHL001 • DOI: 10.18730/4WZY1
18. IRGC 117281Oryza sativa Linnaeus Indica • ASWINA • Genetic stock • BGD
PHL001 • DOI: 10.18730/5CMYC
19. IRGC 117282Oryza sativa Linnaeus Tropical japonica • CYPRESS • Genetic stock • USA
PHL001 • DOI: 10.18730/5CMZD
20. IRGC 117283Oryza sativa Linnaeus Aus • RAYADA • Genetic stock • BGD
PHL001 • DOI: 10.18730/5CN0E