20 OryzaSNP

These 20 diverse varieties and landraces were used for SNP discovery by tiling arrays. Resequencing microarrays were used to interrogate 100 Mb of the unique fraction of the reference genome that captured the impressive genotypic and phenotypic diversity of domesticated rice. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement.

The study was done by Dr. Kenneth L. McNally, et al. in 2009 in https://www.pnas.org/content/early/2009/07/10/0900992106

Crop
rice
Number of accessions
20
Creation date
2009
Published in Genesys
December 9, 2019
Subset metadata

Subset creators


Data curator
Kenneth McNally International Rice Research Institute

Data and resources


MCPD passport data

MCPD - 0b2a6451-05a9-4a8c-8531-20cd8cb52cd0.xlsx

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Accessions

List of accessions included in the subset

2. IRGC 117265 • Oryza sativa Linnaeus Aromatic • DOM SUFID • Genetic stock • Iran
PHL001 • DOI: 10.18730/1PG6J
3. IRGC 117266 • Oryza sativa Linnaeus Aus • DULAR • Genetic stock • India
PHL001 • DOI: 10.18730/4WZGR
4. IRGC 117267 • Oryza sativa Linnaeus Aus • FR 13 A • Genetic stock • India
PHL001 • DOI: 10.18730/4WZHS
5. IRGC 117268 • Oryza sativa Linnaeus Indica • IR 64-21 • Genetic stock • IRRI
PHL001 • DOI: 10.18730/4WZJT
6. IRGC 117269 • Oryza sativa Linnaeus Temperate japonica • LI-JIANG-XIN-TUAN-HEI-GU • Genetic stock • China
PHL001 • DOI: 10.18730/4WZKV
7. IRGC 117270 • Oryza sativa Linnaeus Tropical japonica • M 202 • Genetic stock • United States
PHL001 • DOI: 10.18730/4WZMW
8. IRGC 117271 • Oryza sativa Linnaeus Indica • MINGHUI 63 • Genetic stock • China
PHL001 • DOI: 10.18730/4WZNX
9. IRGC 117272 • Oryza sativa Linnaeus Tropical japonica • MOROBEREKAN • Genetic stock • Guinea
PHL001 • DOI: 10.18730/4WZPY
10. IRGC 117273 • Oryza sativa Linnaeus Aus • N 22 • Genetic stock • India
PHL001 • DOI: 10.18730/4WZQZ
11. IRGC 117274 • Oryza sativa Linnaeus Temperate japonica • NIPPONBARE • Genetic stock • Japan
PHL001 • DOI: 10.18730/4WZR*
12. IRGC 117275 • Oryza sativa Linnaeus Indica • POKKALI • Genetic stock • India
PHL001 • DOI: 10.18730/4WZS~
13. IRGC 117276 • Oryza sativa Linnaeus Indica • SADU CHO • Genetic stock • South Korea
PHL001 • DOI: 10.18730/4WZT$
14. IRGC 117277 • Oryza sativa Linnaeus Indica • SANHUANGZHAN NO 2 • Genetic stock • China
PHL001 • DOI: 10.18730/4WZV=
15. IRGC 117278 • Oryza sativa Linnaeus Indica • SWARNA • Genetic stock • India
PHL001 • DOI: 10.18730/4WZWU
16. IRGC 117279 • Oryza sativa Linnaeus Temperate japonica • TAINUNG 67 • Genetic stock • Taiwan
PHL001 • DOI: 10.18730/4WZX0
17. IRGC 117280 • Oryza sativa Linnaeus Indica • ZHENSHAN 97 B • Genetic stock • China
PHL001 • DOI: 10.18730/4WZY1
18. IRGC 117281 • Oryza sativa Linnaeus Indica • ASWINA • Genetic stock • Bangladesh
PHL001 • DOI: 10.18730/5CMYC
19. IRGC 117282 • Oryza sativa Linnaeus Tropical japonica • CYPRESS • Genetic stock • United States
PHL001 • DOI: 10.18730/5CMZD
20. IRGC 117283 • Oryza sativa Linnaeus Aus • RAYADA • Genetic stock • Bangladesh
PHL001 • DOI: 10.18730/5CN0E