Subset

High-density rice array (HDRA) RDP1

These are entries in the panel from USDA/Cornell for use on the high-density rice array (HDRA) comprised of 700K single-nucleotide polymorphisms (SNPs). The HDRA represented the most densely populated genotyping array available for any organism at that time, based on the number of SNPs/kb interrogated across the genome. The value of these resources for genome-wide association studies (GWAS) was explored using grain length as the phenotype, and use numerous analytical techniques to identify significant associations that uncover both major and minor QTLs. Distinct advantages of cross-population mapping were demonstrated, gaining power by directly accounting for large effect alleles from within the mapping model. It was shown how this may lead to the identification of population-specific haplotypes, which are of particular value to the plant breeder.

McCouch et al 2016, Open access resources for genome-wide association mapping in rice, Nature Comm. 10.1038/ncomms10532

Crop
Rice
Number of accessions
410
Creation date
2016

Subset metadata


Subset creators


Data curator
Dr. Kenneth L. McNally IRRI

Data and resources


MCPD passport data

MCPD - 1962c499-dc2c-46f8-8202-24b5ec445f38.xlsx

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Accessions

List of accessions included in the subset

1. IRGC 117264Oryza sativa Linnaeus • AZUCENA • Genetic stock • Philippines+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZFQ
2. IRGC 117265Oryza sativa Linnaeus • DOM SUFID • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/1PG6J
3. IRGC 117266Oryza sativa Linnaeus • DULAR • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZGR
4. IRGC 117267Oryza sativa Linnaeus • FR 13 A • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZHS
5. IRGC 117268Oryza sativa Linnaeus • IR 64-21 • Genetic stock • Philippines+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZJT
6. IRGC 117269Oryza sativa Linnaeus • LI-JIANG-XIN-TUAN-HEI-GU • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZKV
7. IRGC 117270Oryza sativa Linnaeus • M 202 • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZMW
8. IRGC 117271Oryza sativa Linnaeus • MINGHUI 63 • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZNX
9. IRGC 117272Oryza sativa Linnaeus • MOROBEREKAN • Genetic stock • Guinea+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZPY
10. IRGC 117273Oryza sativa Linnaeus • N 22 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZQZ
11. IRGC 117274Oryza sativa Linnaeus • NIPPONBARE • Genetic stock • Japan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZR*
12. IRGC 117276Oryza sativa Linnaeus • SADU CHO • Genetic stock • Republic of Korea+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZT$
13. IRGC 117277Oryza sativa Linnaeus • SANHUANGZHAN NO 2 • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZV=
14. IRGC 117279Oryza sativa Linnaeus • TAINUNG 67 • Genetic stock • Taiwan ROC+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZX0
15. IRGC 117280Oryza sativa Linnaeus • ZHENSHAN 97 B • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZY1
16. IRGC 117282Oryza sativa Linnaeus • CYPRESS • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CMZD
17. IRGC 117599Oryza sativa Linnaeus • 27 • Genetic stock • Dominican Republic+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X45S
18. IRGC 117600Oryza sativa Linnaeus • AIJIAONANTE • Genetic stock • China+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X46T
19. IRGC 117601Oryza sativa Linnaeus • ARC 10177 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X47V
20. IRGC 117602Oryza sativa Linnaeus • ARC 6578 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X48W
21. IRGC 117603Oryza sativa Linnaeus • ARC 7229 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X49X
22. IRGC 117604Oryza sativa Linnaeus • ASD 1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4AY
23. IRGC 117605Oryza sativa Linnaeus • BASMATI 1 • Genetic stock • Pakistan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4BZ
24. IRGC 117606Oryza sativa Linnaeus • C57-5043 • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4C*
25. IRGC 117607Oryza sativa Linnaeus • CAROLINA GOLD • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4D~
26. IRGC 117608Oryza sativa Linnaeus • CAROLINA GOLD SEL • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4E$
27. IRGC 117609Oryza sativa Linnaeus • CS-M3 • Genetic stock • United States of America+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4F=
28. IRGC 117610Oryza sativa Linnaeus • DZ78 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4GU
29. IRGC 117611Oryza sativa Linnaeus • GERDEH • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4H0
30. IRGC 117612Oryza sativa Linnaeus • GEUMOBYEO • Genetic stock • Republic of Korea+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4J1
31. IRGC 117613Oryza sativa Linnaeus • HABIGANJ BORO 6 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4K2
32. IRGC 117614Oryza sativa Linnaeus • HON CHIM • Genetic stock • Hong Kong S.A.R+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4M3
33. IRGC 117615Oryza sativa Linnaeus • IAC 25 • Genetic stock • Brazil+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4N4
34. IRGC 117616Oryza sativa Linnaeus • ITALICA CAROLINA • Genetic stock • Poland+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4P5
35. IRGC 117617Oryza sativa Linnaeus • KASALATH • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4Q6
36. IRGC 117618Oryza sativa Linnaeus • KERITING TINGGI • Genetic stock • Indonesia+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4R7
37. IRGC 117619Oryza sativa Linnaeus • LEUNG PRATEW • Genetic stock • Thailand+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4S8
38. IRGC 117620Oryza sativa Linnaeus • MEHR • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4T9
39. IRGC 117621Oryza sativa Linnaeus • MOROBEREKAN • Genetic stock • Guinea+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4VA
40. IRGC 117622Oryza sativa Linnaeus • RTS 14 • Genetic stock • Vietnam+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4WB
41. IRGC 117623Oryza sativa Linnaeus • BR24 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4XC
42. IRGC 117624Oryza sativa Linnaeus • KIUKI NO. 46 • Genetic stock • Japan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4YD
43. IRGC 117625Oryza sativa Linnaeus • SML 242 • Genetic stock • Suriname+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X4ZE
44. IRGC 117626Oryza sativa Linnaeus • WC 4419 • Genetic stock • Honduras+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X50F
45. IRGC 117627Oryza sativa Linnaeus • 1021 • Genetic stock • Guatemala+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X51G
46. IRGC 117628Oryza sativa Linnaeus • 205 • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X52H
47. IRGC 117629Oryza sativa Linnaeus • 318 • Genetic stock • Turkey+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X53J
48. IRGC 117630Oryza sativa Linnaeus • 519 • Genetic stock • Uruguay+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X54K
49. IRGC 117631Oryza sativa Linnaeus • 56-122-23 • Genetic stock • Thailand+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X55M
50. IRGC 117632Oryza sativa Linnaeus • 583 • Genetic stock • Ecuador+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4X56N