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Subset of cassava accessions predicted for drought and heat tolerance in silico

The Environmental Genome-Wide Association Study (EnvGWAS) is a method used to identify genetic variants linked to traits influenced by environmental factors. In a study, environmental data from 3,050 curated cassava landraces with collection site coordinates, combined with genotypic information, were analyzed to discover candidate SNP markers associated with drought or/and heat tolerance. These markers were then used to predict accessions most likely to exhibit tolerance to drought or heat due to their high frequency of favorable alleles. Based on preliminary results, a list of 52 accessions predicted in silico is proposed for further validation.

Crop

cassava

Number of accessions

FAO WIEWS Institute

Centro Internacional de Agricultura Tropical

Creation date

November 15, 2024

Published in Genesys

November 16, 2024

Version

See current version of the subset

Subset metadata

Subset creators

Data curator

Monica Carvajal Centro Internacional de Agricultura Tropical (CIAT)

Data and resources

MCPD passport data

MCPD - 3cf643c3-430b-43df-8061-2ff7d4f78be7.xlsx

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Accessions

List of accessions included in the subset

1. IND18 • Manihot esculenta • SL 1 • Traditional cultivar/Landrace • Indonesia

COL003 • DOI: 10.18730/PAEXC

2. ECU22 • Manihot esculenta • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PC1E1

3. ECU25 • Manihot esculenta • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PDPP3

4. ECU26 • Manihot esculenta • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PC1F2

5. ECU27A • Manihot esculenta • BLANCA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P8C5P

6. ECU29 • Manihot esculenta • BLANCA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PB9KF

7. ECU36 • Manihot esculenta • BLANCADECANELA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P8SH6

8. ECU41 • Manihot esculenta • DE TRES MESES • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PB9JE

9. ECU43 • Manihot esculenta • ESPADA BLANCA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PC1A$

10. ECU47 • Manihot esculenta • TAURE#A BLANCA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PC1B=

11. ECU50 • Manihot esculenta • DE TRES MESES • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P8SE3

12. ECU56 • Manihot esculenta • MURRUPANA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PAFP0

13. CR64 • Manihot esculenta • Y. BRASIL VALENCIA • Traditional cultivar/Landrace • Costa Rica

COL003 • DOI: 10.18730/PAW9~

14. COL76B • Manihot esculenta • MONA BLANCA • Traditional cultivar/Landrace • Colombia

COL003 • DOI: 10.18730/PD1T1

15. CR102 • Manihot esculenta • YUCA GUACIMA • Traditional cultivar/Landrace • Costa Rica

COL003 • DOI: 10.18730/PAG5F

16. ECU112 • Manihot esculenta • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P9M35

17. ECU138 • Manihot esculenta • TAURE#A • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P9M13

18. ECU142 • Manihot esculenta • BLANCA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P80EH

19. ECU143 • Manihot esculenta • BLANCA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P807A

20. ECU145 • Manihot esculenta • TAURE#A • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PAFAS

21. ECU147 • Manihot esculenta • BLANCA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P809C

22. ECU153 • Manihot esculenta • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P9KW=

23. ECU154 • Manihot esculenta • MORADA • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PC0WM

24. ECU155 • Manihot esculenta • NULL • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P8058

25. ECU158 • Manihot esculenta • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/P9KXU

26. ECU159 • Manihot esculenta • Traditional cultivar/Landrace • Ecuador

COL003 • DOI: 10.18730/PDP4P

27. PER219 • Manihot esculenta • BLANCA T.8 • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/P7Y0D

28. PER329 • Manihot esculenta • ROSADA MOCHERA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PB728

29. PER332 • Manihot esculenta • TOLONERA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/P8PSX

30. PER333 • Manihot esculenta • BLANCA DE HUACHO • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PCQRC

31. PER336 • Manihot esculenta • BLANCA DE SULLANA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/P7XK0

32. PER340 • Manihot esculenta • XI EEAL-67 • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PBYEG

33. PER341 • Manihot esculenta • XI EEAL-67 • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PCQN9

34. PER348 • Manihot esculenta • NEGRA MOCHERA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PCQPA

35. COL375 • Manihot esculenta • NOLI • Traditional cultivar/Landrace • Colombia

COL003 • DOI: 10.18730/PAZS$

36. PER382 • Manihot esculenta • LISTON • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PACNE

37. PER385 • Manihot esculenta • NEGRA MOCHERA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/P8PKQ

38. PER510 • Manihot esculenta • YOMPOREMAM • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/P8P59

39. PER609 • Manihot esculenta • INGERTA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PCPXP

40. PER610 • Manihot esculenta • SAUCE TONDOPA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PA1T0

41. PER611 • Manihot esculenta • PUNCHE • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/P9H7R

42. PER614 • Manihot esculenta • A$ARTE • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/P9H8S

43. PER615 • Manihot esculenta • YUCA BLANCA • Traditional cultivar/Landrace • Peru

COL003 • DOI: 10.18730/PBXKT

44. BRA1169 • Manihot esculenta • AMANSA BURRO • Traditional cultivar/Landrace • Brazil

COL003 • DOI: 10.18730/P9G3S

45. BRA1253 • Manihot esculenta • BRANCA • Traditional cultivar/Landrace • Brazil

COL003 • DOI: 10.18730/PAX8V