Subset

High-density rice array (HDRA) RDP2

These are entries in the panel from IRRI for use on the high-density rice array (HDRA) comprised of 700K single-nucleotide polymorphisms (SNPs). The HDRA represented the most densely populated genotyping array available for any organism at that time, based on the number of SNPs/kb interrogated across the genome. The value of these resources for genome-wide association studies (GWAS) was explored using grain length as the phenotype, and use numerous analytical techniques to identify significant associations that uncover both major and minor QTLs. Distinct advantages of cross-population mapping were demonstrated, gaining power by directly accounting for large effect alleles from within the mapping model. It was shown how this may lead to the identification of population-specific haplotypes, which are of particular value to the plant breeder.

McCouch et al 2016, Open access resources for genome-wide association mapping in rice, Nature Comm. 10.1038/ncomms10532

Crop
Rice
Number of accessions
1,425
Creation date
2016

Subset metadata


Subset creators


Data curator
Dr. Kenneth L. McNally International Rice Research Institute

Data and resources


MCPD passport data

MCPD - d4242b86-c368-4d81-a50d-5bbb709733d3.xlsx

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Accessions

List of accessions included in the subset

1. IRGC 117275Oryza sativa Linnaeus • POKKALI • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZS~
2. IRGC 117278Oryza sativa Linnaeus • SWARNA • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/4WZWU
3. IRGC 117281Oryza sativa Linnaeus • ASWINA • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CMYC
4. IRGC 117283Oryza sativa Linnaeus • RAYADA • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN0E
5. IRGC 117419Oryza sativa Linnaeus • ABRI::IRGC 32380-1 • Genetic stock • Bhutan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN2G
6. IRGC 117420Oryza sativa Linnaeus • AEDAL::IRGC 55441-1 • Genetic stock • Republic of Korea+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN3H
7. IRGC 117424Oryza sativa Linnaeus • ARC 10317::IRGC 12430-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN7N
8. IRGC 117425Oryza sativa Linnaeus • ARC 10497::IRGC 12485-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN8P
9. IRGC 117426Oryza sativa Linnaeus • ARC 13829::IRGC 42469-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CN9Q
10. IRGC 117429Oryza sativa Linnaeus • AUS JOTA::IRGC 66767-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNCT
11. IRGC 117434Oryza sativa Linnaeus • BARAN BORO::IRGC 27509-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNHZ
12. IRGC 117438Oryza sativa Linnaeus • BASMATI LAMO::IRGC 58881-1 • Genetic stock • Nepal+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNN=
13. IRGC 117439Oryza sativa Linnaeus • BICO BRANCO::IRGC 38994-1 • Genetic stock • Brazil+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNPU
14. IRGC 117440Oryza sativa Linnaeus • CANA ROXA::IRGC 25966-1 • Genetic stock • Brazil+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNQ0
15. IRGC 117443Oryza sativa Linnaeus • CERE AIR::IRGC 43369-1 • Genetic stock • Indonesia+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNT3
16. IRGC 117444Oryza sativa Linnaeus • CHAHORA 144::IRGC 27869-1 • Genetic stock • Pakistan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNV4
17. IRGC 117446Oryza sativa Linnaeus • CHHOTE DHAN::IRGC 58930-1 • Genetic stock • Nepal+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNX6
18. IRGC 117447Oryza sativa Linnaeus • CHITRAJ (DA 23)::IRGC 6208-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CNY7
19. IRGC 117449Oryza sativa Linnaeus • CHUAN 3::IRGC 17051-1 • Genetic stock • Taiwan ROC+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP09
20. IRGC 117450Oryza sativa Linnaeus • CHUAN 4::IRGC 17052-1 • Genetic stock • Taiwan ROC+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP1A
21. IRGC 117451Oryza sativa Linnaeus • CICIH BETON::IRGC 43372-1 • Genetic stock • Indonesia+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP2B
22. IRGC 117453Oryza sativa Linnaeus • CO 25::IRGC 3697-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP4D
23. IRGC 117454Oryza sativa Linnaeus • CO 39::IRGC 51231-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP5E
24. IRGC 117455Oryza sativa Linnaeus • DA 1::IRGC 45624-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP6F
25. IRGC 117456Oryza sativa Linnaeus • DA 13::IRGC 5857-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP7G
26. IRGC 117457Oryza sativa Linnaeus • DA 16::IRGC 6245-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP8H
27. IRGC 117458Oryza sativa Linnaeus • DA 28::IRGC 6246-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CP9J
28. IRGC 117459Oryza sativa Linnaeus • DA 8::IRGC 6422-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPAK
29. IRGC 117460Oryza sativa Linnaeus • DA 9::IRGC 5854-1 • Genetic stock • Bangladesh+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPBM
30. IRGC 117462Oryza sativa Linnaeus • DAWASAM (RED)::IRGC 32389-1 • Genetic stock • Bhutan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPDP
31. IRGC 117463Oryza sativa Linnaeus • DE ABRIL::IRGC 50463-1 • Genetic stock • Brazil+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPEQ
32. IRGC 117466Oryza sativa Linnaeus • DOM ZARD::IRGC 12881-1 • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPHT
33. IRGC 117467Oryza sativa Linnaeus • DOMSIAH::IRGC 32292-1 • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPJV
34. IRGC 117470Oryza sativa Linnaeus • FANDRAPOTSY::IRGC 10984-1 • Genetic stock • Madagascar+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPNY
35. IRGC 117471Oryza sativa Linnaeus • FARANGEY::IRGC 32390-1 • Genetic stock • Bhutan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPPZ
36. IRGC 117475Oryza sativa Linnaeus • GHARIB::IRGC 32303-1 • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPT=
37. IRGC 117476Oryza sativa Linnaeus • GHARIB::IRGC 32306-1 • Genetic stock • Iran+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPVU
38. IRGC 117478Oryza sativa Linnaeus • GIE 57::IRGC 8231-1 • Genetic stock • Vietnam+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CPX1
39. IRGC 117481Oryza sativa Linnaeus • GOMPA 2::IRGC 12894-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQ04
40. IRGC 117483Oryza sativa Linnaeus • HAIFUGOYA::IRGC 17054-1 • Genetic stock • Taiwan ROC+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQ26
41. IRGC 117484Oryza sativa Linnaeus • HAWM OM::IRGC 23729-1 • Genetic stock • Thailand+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQ37
42. IRGC 117491Oryza sativa Linnaeus • ILIS AIR::IRGC 43400-1 • Genetic stock • Indonesia+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQAE
43. IRGC 117492Oryza sativa Linnaeus • INDANE::IRGC 33130-1 • Genetic stock • Myanmar+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQBF
44. IRGC 117494Oryza sativa Linnaeus • JC 1::IRGC 9091-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQDH
45. IRGC 117495Oryza sativa Linnaeus • JC 101::IRGC 9060-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQEJ
46. IRGC 117496Oryza sativa Linnaeus • JC 111::IRGC 9062-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQFK
47. IRGC 117498Oryza sativa Linnaeus • JC 157::IRGC 9074-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQHN
48. IRGC 117500Oryza sativa Linnaeus • JC 91::IRGC 9177-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQKQ
49. IRGC 117501Oryza sativa Linnaeus • JC 92::IRGC 9176-1 • Genetic stock • India+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQMR
50. IRGC 117502Oryza sativa Linnaeus • JHONA 26::IRGC 27967-1 • Genetic stock • Pakistan+ Add to my list
PHL001International Rice Research Institute, Philippines • DOI: 10.18730/5CQNS