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Virus disease diagnosis for germplasm

2024.1

Diseased samples were collected from the genebank germplasm in the World Vegetable Center field, Tainan HQ, Taiwan. Total RNA or DNA was extracted from the collected samples individually, and virus detection was conducted with PCR or RT-PCR in the virology lab using viral genus degenerate primers of begomovirus, potyvirus, crinivirus, polerovirus, orthotospovirus, and tobamovirus; and species-specific primers of cucumber mosaic virus (CMV).

Partner
WorldVeg World Vegetable Center
Number of accessions
86
Number of traits
1
Start of evaluation
September 1, 2022
End of evaluation
April 30, 2023
Dataset metadata

Dataset creators

Data collector
Hao-wen Cheng WorldVeg
Data manager
Yan-kuang Chan WorldVeg

Dataset use and licensing

Licensed under
CC0 Public Domain Dedication
More information
https://creativecommons.org/publicdomain/zero/1.0/

Data and resources

Dataset file

Virus disease diagnosis for germplasm_RAWDATA.xlsx

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Dataset metadata

Metadata.xlsx

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MCPD passport data

MCPD - 3cd8edb3-e331-4cda-8932-f0d5251703a6.xlsx

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Other Metadata

Date of dataset
Date not provided
Metadata create date
June 6, 2024
Metadata updated date
June 6, 2024
Published in Genesys
June 6, 2024
Locations
Location
Taiwan, Province of China
Date of evaluation
September 1, 2022 — April 30, 2023
ISO3 country code
TWN
Traits observed

VirusDetected

PCR or RT-PCR

Accessions

List of accessions included in the dataset

1. VI006616 • Solanum lycopersicum L. • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
2. VI013898 • Capsicum annuum L. • C02163 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
3. VI013901 • Capsicum annuum L. • C02166 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
4. VI013902 • Capsicum annuum L. • C02167 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
5. VI013908 • Capsicum annuum L. • C02173 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
6. VI013937 • Capsicum annuum L. • C02202 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
7. VI013939 • Capsicum annuum L. • C02204 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
8. VI029220 • Capsicum chinense Jacq. • C04487 • Traditional cultivar/Landrace • Peru
TWN001 • DOI: N/A
9. VI029332 • Capsicum chinense Jacq. • C04598 • Traditional cultivar/Landrace • Ecuador
TWN001 • DOI: N/A
10. VI029366 • Capsicum chinense Jacq. • C04632 • Traditional cultivar/Landrace • Peru
TWN001 • DOI: N/A
11. VI029368 • Capsicum chinense Jacq. • C04634 • Traditional cultivar/Landrace • Peru
TWN001 • DOI: N/A
12. VI029394 • Capsicum chinense Jacq. • C04660 • Traditional cultivar/Landrace • Suriname
TWN001 • DOI: N/A
13. VI030181 • Solanum lycopersicum L. • L05319 • Traditional cultivar/Landrace • China
TWN001 • DOI: N/A
14. VI030186 • Solanum lycopersicum L. • L05324 • Traditional cultivar/Landrace • China
TWN001 • DOI: N/A
15. VI030896 • Solanum lycopersicum L. • BL 481 • Traditional cultivar/Landrace • Thailand
TWN001 • DOI: N/A
16. VI030953 • Solanum lycopersicum L. • L05799 • Traditional cultivar/Landrace • Syria
TWN001 • DOI: N/A
17. VI031205 • Capsicum annuum L. • 53IVT • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
18. VI031824 • Solanum lycopersicum L. • TL00825 • Traditional cultivar/Landrace • Philippines
TWN001 • DOI: N/A
19. VI031826 • Solanum lycopersicum L. • TL00827 • Traditional cultivar/Landrace • United States
TWN001 • DOI: N/A
20. VI031829 • Solanum lycopersicum L. • TL00830 • Traditional cultivar/Landrace
TWN001 • DOI: N/A
21. VI033891 • Phaseolus vulgaris L. • TOT2855 • Traditional cultivar/Landrace • Spain
TWN001 • DOI: N/A
22. VI033893 • Phaseolus vulgaris L. • TOT2857 • Traditional cultivar/Landrace • Spain
TWN001 • DOI: N/A
23. VI033898 • Phaseolus vulgaris L. • TOT2862 • Traditional cultivar/Landrace • Spain
TWN001 • DOI: N/A
24. VI033899 • Phaseolus vulgaris L. • TOT2863 • Traditional cultivar/Landrace • Spain
TWN001 • DOI: N/A
25. VI033901 • Phaseolus vulgaris L. • TOT2865 • Traditional cultivar/Landrace • Spain
TWN001 • DOI: N/A
26. VI034424 • Vigna unguiculata (L.) Walp. subsp. sesquipedalis (L.) Verdc. • TV02101 • Traditional cultivar/Landrace • Malaysia
TWN001 • DOI: N/A
27. VI037239 • Solanum galapagense S. C. Darwin & Peralta • L06036 • Wild • Ecuador
TWN001 • DOI: N/A
28. VI037241 • Solanum galapagense S. C. Darwin & Peralta • L06038 • Wild • Ecuador
TWN001 • DOI: N/A
29. VI037243 • Solanum cheesmaniae (L. Riley) Fosberg • L06040 • Wild • Ecuador
TWN001 • DOI: N/A
30. VI037290 • Solanum pimpinellifolium L. • L06089 • Wild • Peru
TWN001 • DOI: N/A
31. VI037291 • Solanum pimpinellifolium L. • L06090 • Wild • Peru
TWN001 • DOI: N/A
32. VI037339 • Solanum galapagense S. C. Darwin & Peralta • L06146 • Wild • Ecuador
TWN001 • DOI: N/A
33. VI037455 • Capsicum annuum L. • C05686 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
34. VI037868 • Solanum galapagense S. C. Darwin & Peralta • LA 1137 • Wild • Ecuador
TWN001 • DOI: N/A
35. VI039844 • Lablab purpureus (L.) Sweet • TOT0842 • Traditional cultivar/Landrace • Thailand
TWN001 • DOI: N/A
36. VI040663 • Luffa acutangula (L.) ROXB. • TOT1139 • Traditional cultivar/Landrace • Thailand
TWN001 • DOI: N/A
37. VI040813 • Luffa acutangula (L.) ROXB. • TOT1235 • Traditional cultivar/Landrace • Thailand
TWN001 • DOI: N/A
38. VI041109 • Luffa aegyptiaca Mill. • TOT1412 • Traditional cultivar/Landrace • Thailand
TWN001 • DOI: N/A
39. VI041120 • Luffa aegyptiaca Mill. • TOT1423 • Traditional cultivar/Landrace • Thailand
TWN001 • DOI: N/A
40. VI041500 • Solanum habrochaites S. Knapp & D. M. Spooner • TL01359 • Breeding/Research Material • Taiwan
TWN001 • DOI: N/A
41. VI043449 • Capsicum annuum L. • PBC903 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
42. VI044167 • Solanum lycopersicum L. • L06098 • Traditional cultivar/Landrace • Philippines
TWN001 • DOI: N/A
43. VI044344 • Capsicum annuum L. • C05573 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
44. VI045279 • Capsicum annuum L. • C01902 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
45. VI045280 • Capsicum annuum L. • C01906 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
46. VI045283 • Capsicum annuum L. • C02687 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
47. VI046817 • Capsicum annuum L. • PBC134 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
48. VI046915 • Capsicum annuum L. • PBC651 • Traditional cultivar/Landrace • India
TWN001 • DOI: N/A
49. VI047378 • Phaseolus vulgaris L. • TV03833 • Traditional cultivar/Landrace • Vietnam
TWN001 • DOI: N/A
50. VI047410 • Vigna unguiculata (L.) Walp. subsp. sesquipedalis (L.) Verdc. • TV03836 • Traditional cultivar/Landrace • Vietnam
TWN001 • DOI: N/A